# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1mxa	383	1.13e+00	1mxb	d.130.1.1	41326
				d.130.1.1	41327
				d.130.1.1	41328
1mxb	383	1.18e+00	1mxb	d.130.1.1	41329
				d.130.1.1	41330
				d.130.1.1	41331
1a6bB	40	2.06e+00	1a6bB	g.40.1.1	45172
1fuxA	166	2.26e+00	1fjjA	b.17.1.2	60034
1h7dA	49	2.34e+00		j.88.1.1	65701
1rg9A	383	2.61e+00			
1c8gA	548	5.37e+00	2cas	b.121.5.2	23380
1su8A	636	9.29e+00			
1jjyA	636	9.47e+00	1jjyA	e.26.1.2	63141
1klo	162	1.29e+01	1klo	g.3.11.2	44326
				g.3.11.2	44327
				g.3.11.2	44328
1lslA	113	1.34e+01		g.60.1.1	78178
				g.60.1.1	78179
1bw3	125	1.34e+01	1bw4	b.52.1.2	26899
1l7lA	121	1.38e+01		b.18.1.16	77790
1bw4	125	1.41e+01	1bw4	b.52.1.2	26900
1qvjA	292	1.60e+01			
1q33A	292	1.63e+01			
2cas	548	1.71e+01	2cas	b.121.5.2	23376
1nscA	390	1.73e+01	2qwc	b.68.1.1	27591
4dpvZ	584	1.83e+01	2cas	b.121.5.2	23377
1jcv	153	1.84e+01	1mfmA	b.1.8.1	22279
1f1gA	154	1.85e+01		b.1.8.1	76153
1qm4A	396	1.91e+01	1mxb	d.130.1.1	41350
				d.130.1.1	41351
				d.130.1.1	41352
1s5lB	510	1.94e+01			
1vgh	55	2.71e+01	2vgh	g.25.1.1	44945
2vgh	55	2.71e+01	2vgh	g.25.1.1	44946
1kmxA	55	2.75e+01		g.25.1.1	72758
1fd9A	213	2.87e+01	1fd9A	d.26.1.1	59771
1eh9A	558	2.89e+01	1ehaA	b.1.18.2	21858
				b.71.1.1	27785
				c.1.8.1	28772
1ueoA	63	2.91e+01			
1ehaA	558	2.97e+01	1ehaA	b.1.18.2	21859
				b.71.1.1	27786
				c.1.8.1	28773
1l5cA	92	3.11e+01		b.9.1.1	73577
1m2bA	110	3.15e+01		c.47.1.11	78474
1gu7A	364	3.19e+01		b.35.1.2	83321
				c.2.1.1	83322
1i1rB	181	3.20e+01	1i1rB	a.26.1.1	61548
1m2aA	110	3.60e+01		c.47.1.11	78472
1i6uA	130	3.84e+01		d.140.1.1	61850
1f37A	110	3.84e+01	1f37A	c.47.1.11	33088