# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1lslA	113	7.32e-01		g.60.1.1	78178
				g.60.1.1	78179
1a6bB	40	1.34e+00	1a6bB	g.40.1.1	45172
1h7dA	49	1.66e+00		j.88.1.1	65701
1jjyA	636	6.48e+00	1jjyA	e.26.1.2	63141
1m93B	245	6.72e+00			
2eboA	74	7.34e+00	2eboA	h.3.2.1	45754
1mv3A	213	7.73e+00			
1kozA	36	7.93e+00		g.3.6.2	72833
2rveA	244	7.98e+00	1rvaA	c.52.1.2	33283
1aym1	285	9.42e+00	1aym1		
1su8A	636	9.47e+00			
1izlA	360	1.09e+01		i.5.1.1	76994
1ueoA	63	1.10e+01			
1rlhA	173	1.12e+01			
1jj2Y	73	1.28e+01	1ffkW	g.41.8.1	63110
1s5lB	510	1.29e+01			
1s5lA	344	1.35e+01			
1ffkB	338	1.41e+01	1ffkB	b.43.3.2	25719
1lv3A	68	1.55e+01		g.39.1.9	78231
1jj2B	337	1.60e+01	1ffkB	b.43.3.2	63086
1ffkW	73	1.63e+01	1ffkW	g.41.8.1	45315
1qk9A	92	1.85e+01	1qk9A	d.10.1.3	37485
1dghB	498	1.98e+01	1cf9A	e.5.1.1	42791
1qhhA	167	2.04e+01	1pjr	c.37.1.19	32393
1kmxA	55	2.23e+01		g.25.1.1	72758
1pyiA	96	2.35e+01	1pyiA	g.38.1.1	45079
				h.1.3.1	45512
1qu6A	179	2.40e+01	1qu6A	d.50.1.1	38784
				d.50.1.1	38785
1dgfA	497	2.48e+01	1cf9A	e.5.1.1	42782
2vgh	55	2.57e+01	2vgh	g.25.1.1	44946
1vgh	55	2.68e+01	2vgh	g.25.1.1	44945
1aba	87	2.74e+01	1aba	c.47.1.1	32760
7catA	506	2.88e+01	1cf9A	e.5.1.1	42781
1devB	41	3.14e+01	1devB	j.64.1.1	46354
1eysL	280	3.30e+01	6prcL	f.26.1.1	43515
4rhv4	68	3.43e+01	4rhv4		
1ccvA	56	3.45e+01	1eaiC	g.22.1.1	44897
1eonA	245	3.51e+01	1rvaA	c.52.1.2	33238
1m4iA	181	3.59e+01		d.108.1.1	74457
2if1	126	3.70e+01	2if1	d.64.1.1	39547
1jj2X	240	3.71e+01	1ffkV	c.9.2.1	63109