# List of top-scoring protein chains for t04-100-30-str2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1a6bB	40	1.75e+00	1a6bB	g.40.1.1	45172
1jj2X	240	2.12e+00	1ffkV	c.9.2.1	63109
1vkdA	338	4.81e+00			
1qlnA	883	5.49e+00	1cezA	e.8.1.3	43111
1mswD	883	6.43e+00		e.8.1.3	79427
1rf8B	100	7.40e+00			
1nciA	110	9.02e+00	1edhA	b.1.6.1	22191
2vsgA	358	9.80e+00	2vsgA	h.4.1.1	45780
1lmiA	131	1.02e+01		b.1.19.1	78098
1cb8A	678	1.07e+01	1cb8A	a.102.3.2	18849
				b.24.1.1	23898
				b.30.5.2	24422
1cr1A	296	1.07e+01	1cr1A	c.37.1.11	32286
1n8yC	608	1.39e+01		c.10.2.5	80314
				c.10.2.5	80315
				g.3.9.1	80316
				g.3.9.1	80317
1h7dA	49	1.53e+01		j.88.1.1	65701
1l7lA	121	1.65e+01		b.18.1.16	77790
1nscA	390	1.74e+01	2qwc	b.68.1.1	27591
1fjjA	159	1.98e+01	1fjjA	b.17.1.2	59852
1ga6A	372	2.17e+01	1ga1A	c.41.1.2	32556
1s5lB	510	2.19e+01			
1ctn	540	2.27e+01	1ctn	b.1.18.2	21876
				c.1.8.5	29005
				d.26.3.1	38439
1v0dA	329	2.89e+01			
1ivg	388	2.92e+01	2qwc	b.68.1.1	27578
1bxoA	323	2.93e+01	2er7E	b.50.1.2	26805
1sgoA	139	3.04e+01			
1ueoA	63	3.07e+01			
1jxpA	186	3.13e+01	1jxpA	b.47.1.3	26402
3cox	507	3.48e+01	1b8sA	c.3.1.2	30332
				d.16.1.1	37863
1avaC	181	3.80e+01	1avaC	b.42.4.1	25604
1f8eA	388	3.82e+01	2qwc	b.68.1.1	59694
1fuxA	166	3.90e+01	1fjjA	b.17.1.2	60034
2if1	126	4.00e+01	2if1	d.64.1.1	39547