# List of top-scoring protein chains for t04-100-30-bys hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1jj2B	337	2.54e+00	1ffkB	b.43.3.2	63086
1s72B	338	2.98e+00			
1fjjA	159	5.39e+00	1fjjA	b.17.1.2	59852
1poiA	317	7.16e+00	1poiA	unknown_sccs	34153
1kid	203	1.27e+01	1derA	c.8.5.1	30771
1oaoA	674	1.36e+01		e.26.1.2	86744
1fh0A	221	1.38e+01	1cs8A	d.3.1.1	59832
1bkvA	30	1.39e+01		k.3.1.1	46402
1i7pA	274	1.42e+01		b.43.4.2	66048
				c.25.1.1	66049
1m4iA	181	1.42e+01		d.108.1.1	74457
1nciA	110	1.68e+01	1edhA	b.1.6.1	22191
1a6bB	40	1.75e+01	1a6bB	g.40.1.1	45172
1zfjA	491	1.98e+01	1ak5	c.1.5.1	28638
				d.37.1.1	38540
				d.37.1.1	38541
1jjyA	636	2.08e+01	1jjyA		
1su8A	636	2.14e+01		e.26.1.2	-12015
1jakA	512	2.36e+01		c.1.8.6	66472
				d.92.2.1	66473
1cs8A	316	2.40e+01	1cs8A	d.3.1.1	37065
1hp5A	512	2.42e+01	1hp4A	c.1.8.6	61113
				d.92.2.1	61114
1tdhA	364	2.60e+01			
1krhA	338	2.68e+01		b.43.4.2	72891
				c.25.1.2	72892
				d.15.4.2	72893
1fuxA	166	2.84e+01	1fjjA	b.17.1.2	60034
1cr1A	296	2.90e+01	1cr1A	c.37.1.11	32286
1bw3	125	3.05e+01	1bw4	b.52.1.2	26899
1qsuA	30	3.08e+01		k.3.1.1	46399
1nuyA	337	3.15e+01		e.7.1.1	86213
1nykA	165	3.35e+01		b.33.1.1	86408
1lmiA	131	3.37e+01		b.1.19.1	78098
1ndh	272	3.50e+01	1ndh	b.43.4.2	25662
				c.25.1.1	31552
1aol	228	3.57e+01	1aol	b.20.1.1	23840
1oe1A	336	3.68e+01		b.6.1.3	86891
				b.6.1.3	86892
1epxA	370	3.72e+01	1fbaA	c.1.10.1	29150
1h54A	754	3.89e+01		a.102.1.4	60634
				b.30.5.3	60635