# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
3nul	130	7.10e-01	3nul	d.110.1.1	40891
1jj2X	240	9.39e-01	1ffkV	c.9.2.1	63109
1a6bB	40	1.27e+00	1a6bB	g.40.1.1	45172
1rf8B	100	1.41e+00			
1bby	69	3.40e+00	2bby	a.4.5.15	16149
1g26A	31	5.96e+00	1g26A	g.3.16.1	44381
1s5lB	510	6.88e+00			
1khcA	147	1.08e+01		b.34.9.2	68608
1fn9A	365	1.39e+01	1fn9A	d.196.1.1	59894
1a88A	275	1.40e+01	1brt	c.69.1.12	34707
1m70A	190	1.45e+01			
1kg1A	60	1.85e+01			
1cr1A	296	1.85e+01	1cr1A	c.37.1.11	32286
1dxsA	80	1.91e+01	1cokA	a.60.1.2	17944
1mwwA	128	2.00e+01			
1jj2B	337	2.17e+01	1ffkB	b.43.3.2	63086
1rg9A	383	2.18e+01			
1cot	129	2.69e+01	1ycc	a.3.1.1	15899
1cei	94	2.78e+01	1cei	a.28.2.1	16939
1m26A	133	3.03e+01			
1jxpA	186	3.12e+01	1jxpA	b.47.1.3	26402
1ugxA	133	3.30e+01			
3pviA	157	3.32e+01	3pviA	c.52.1.6	33300
1nekC	129	3.45e+01		f.21.2.2	80431
1bxoA	323	3.45e+01	2er7E	b.50.1.2	26805
1ctf	74	3.63e+01	1ctf	d.45.1.1	38759
1jjdA	55	3.65e+01	1jjdA	g.46.1.1	63116
1nciA	110	3.80e+01	1edhA	b.1.6.1	22191
1bg6	359	3.81e+01	1bg6	a.100.1.5	18810
				c.2.1.6	30214
1mzgA	146	3.88e+01		d.224.1.1	79696
1hlqA	75	3.98e+01		g.35.1.1	83613