CreatePredAlphaCost pred_alpha2k alpha11 T0205.t2k.alpha.rdb 2 alpha alpha_prev sum 
CreatePredAlphaCost pred_alpha04 alpha11 T0205.t04.alpha.rdb 2 alpha alpha_prev sum 

SetCost wet6.5 3 near_backbone 3 way_back 3 dry5 8 dry6.5 12 dry8 8 dry12 2 \
	phobic_fit 2 \
	sidechain 6 \
	bystroff 5 \
	soft_clashes 20  backbone_clashes 2 \
	break 30  \
	pred_alpha2k 5 \
	pred_alpha04 1 \
	constraints 10 \
	hbond_geom 0.1 \
	hbond_geom_backbone 0.1 \
	hbond_geom_beta 0.6 \
	hbond_geom_beta_pair 1.5

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	ssbond, hbond, or just arbitrary pairs of atoms.

include T0205.t2k.dssp-ehl2.constraints
include T0205.t2k.str2.constraints
include T0205.t2k.stride-ebghtl.constraints
include T0205.t2k.alpha.constraints

SheetConstraint R22  S26	D16 N12 hbond I23	1.0
SheetConstraint R22  V25	E50 A53	hbond E50	3.0
SheetConstraint E101 Q96	D48 A53 hbond L51	4.0 

SheetConstraint A98 G92		T81 K87 hbond V95	4.0
SheetConstraint T103 V95	V75 I83 hbond V75	4.0



Constraint	F110.CB	L104.CB	-10	7	12	1.0
Constraint	L113.CB	I102.CB	-10	7	12	1.0
Constraint	V128.CB A57.CB	-10	10	25	1.0