SetCost wet6.5 3 near_backbone 3 way_back 3 dry5 5 dry6.5 10 dry8 12 dry12 2 \
	phobic_fit 2 \
	sidechain 6 \
	bystroff 5 \
	soft_clashes 20  backbone_clashes 2 \
	break 30  \
	pred_alpha2 5 \
	constraints 10 \
	hbond_geom 0.1 \
	hbond_geom_backbone 0.1 \
	hbond_geom_beta 0.6 \
	hbond_geom_beta_pair 2

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	ssbond, hbond, or just arbitrary pairs of atoms.

include T0205.t2k.dssp-ehl2.constraints
include T0205.t2k.str2.constraints
include T0205.t2k.stride-ebghtl.constraints
include T0205.t2k.alpha.constraints

# from try3-opt2
# Hbond (T0205)S17.O	(T0205)R22.N	# 2.51398

Hbond (T0205)N21.O	(T0205)E50.N	# 3.0415
Hbond (T0205)I23.N	(T0205)E50.O	# 2.86114
Hbond (T0205)I23.O	(T0205)S52.N	# 2.93825
Hbond (T0205)V25.N	(T0205)S52.O	# 2.86975

# Hbond (T0205)R41.O	(T0205)Y46.N	# 3.14027

Hbond (T0205)N47.O	(T0205)I102.N	# 2.75394
Hbond (T0205)V49.N	(T0205)I100.O	# 2.84655
Hbond (T0205)V49.O	(T0205)I100.N	# 2.84954
Hbond (T0205)L51.N	(T0205)A98.O	# 2.87324
Hbond (T0205)L51.O	(T0205)A98.N	# 2.97004
Hbond (T0205)A53.N	(T0205)Q96.O	# 3.12525
Hbond (T0205)A53.O	(T0205)Q96.N	# 2.93791
Hbond (T0205)G55.N	(T0205)P94.O	# 2.81118

Hbond (T0205)K77.N	(T0205)E101.O	# 2.97594
Hbond (T0205)K77.O	(T0205)E101.N	# 3.04427
Hbond (T0205)I79.N	(T0205)K99.O	# 3.03215

Hbond (T0205)M80.O	(T0205)K99.N	# 3.11611
Hbond (T0205)S82.N	(T0205)K97.O	# 2.85133
Hbond (T0205)S82.O	(T0205)K97.N	# 2.73833
Hbond (T0205)V84.N	(T0205)V95.O	# 2.99058
Hbond (T0205)V84.O	(T0205)V95.N	# 2.77084
Hbond (T0205)I86.N	(T0205)R93.O	# 2.87135
Hbond (T0205)I86.O	(T0205)R93.N	# 2.79496



# try to fix up initial strand.
Hbond N12.O	S26.N
Hbond A14.N	Q24.O	# 2.80988
Hbond A14.O	Q24.N	# 2.84953
Hbond D16.N	R22.O	# 2.92149


# try to maintain final antiparallel strands

hbond	V75.N	T103.O	0.5
hbond	V75.O	T103.N	0.5
hbond	K77.N	E101.O	0.5
hbond	K77.O	E101.N	0.5
hbond	I79.N	K99.O	0.5
hbond	I79.O	K99.N	0.5
hbond	T81.N	K97.O	0.5
hbond	T81.O	K97.N	0.5
hbond	I83.N	V95.O	0.5
hbond	I83.O	V95.N	0.5