CreatePredAlphaCost pred_alpha2k alpha11 T0205.t2k.alpha.rdb 2 alpha alpha_prev sum 
CreatePredAlphaCost pred_alpha04 alpha11 T0205.t04.alpha.rdb 2 alpha alpha_prev sum 

SetCost wet6.5 3 near_backbone 3 way_back 3 dry5 8 dry6.5 12 dry8 8 dry12 2 \
	phobic_fit 2 \
	sidechain 6 \
	bystroff 5 \
	soft_clashes 30  backbone_clashes 2 \
	break 40  \
	pred_alpha2k 5 \
	pred_alpha04 1 \
	constraints 10 \
	hbond_geom 0.1 \
	hbond_geom_backbone 0.1 \
	hbond_geom_beta 0.6 \
	hbond_geom_beta_pair 1.5

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	ssbond, hbond, or just arbitrary pairs of atoms.

include T0205.t2k.dssp-ehl2.constraints
include T0205.t2k.str2.constraints
include T0205.t2k.stride-ebghtl.constraints
include T0205.t2k.alpha.constraints

# from try9-opt2.sheets
SheetConstraint N12 D16 	Q24 K20 	hbond A14
SheetConstraint N21 Q24 	V49 S52 	hbond I23
SheetConstraint D48 G55 	E101 P94	hbond V49
SheetConstraint V75 I79 	T103 K99	hbond K77
SheetConstraint M80 K87 	K99 G92 	hbond S82


# tuck C-terminal helix out of the way
Constraint	F110.CB	L104.CB	-10	7	12	1.0
Constraint	L113.CB	I102.CB	-10	7	12	1.0
Hbond		K121.NZ	E76.OE2	1.0
Constraint	V128.CB I67.CB	-10	7	12	1.0

# tuck N-terminal helix out of the way
constraint 		E3.OE1 K29.NZ	0	2.6	6	1.0
constraint 		E3.OE2 K29.NZ	0	2.6	6	1.0