# List of top-scoring protein chains for T0205.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nfjA 89 3.52e-19 1nh9A 87 8.08e-19 1h0xA 100 3.78e-18 d.68.6.1 76451 1udvA 89 2.78e-08 1lpbB 449 9.68e-01 1gpl b.12.1.2 23643 c.69.1.19 34791 1eysL 280 1.36e+00 6prcL f.26.1.1 43515 1cr5A 189 1.38e+00 1cr5A b.52.2.3 26931 d.31.1.1 38465 1auoA 218 1.46e+00 1auoA c.69.1.14 34716 6fivA 113 1.91e+00 1fmb b.50.1.1 26763 1jykA 254 1.92e+00 c.68.1.13 67458 5fivA 113 1.95e+00 1fmb b.50.1.1 26765 1ik6A 369 2.01e+00 c.36.1.7 66174 c.48.1.2 66175 4fiv 113 2.07e+00 1fmb b.50.1.1 26762 3fivA 116 2.09e+00 1fmb b.50.1.1 26768 1n10A 241 2.10e+00 b.7.3.1 79774 b.52.1.3 79775 6prcL 273 2.52e+00 6prcL f.26.1.1 43434 1dxrL 273 2.66e+00 6prcL f.26.1.1 43431 1vhwA 253 2.89e+00 1ethA 448 3.08e+00 1gpl b.12.1.2 23641 c.69.1.19 34789 1ea7A 310 3.37e+00 c.41.1.1 70086 1qqp2 218 4.64e+00 1qqp2 1lgbC 159 4.87e+00 1cb6A c.94.1.2 35858 1a3c 181 5.50e+00 1a3c c.61.1.1 34095 1l0iA 78 7.19e+00 a.28.1.1 77643 1nplA 109 7.38e+00 1b2pA b.78.1.1 27997 1jw1A 689 7.46e+00 c.94.1.2 84234 c.94.1.2 84235 3pgmA 244 7.68e+00 1blf 689 7.92e+00 1cb6A c.94.1.2 35859 c.94.1.2 35860 1l0hA 78 7.99e+00 a.28.1.1 77642 1acp 77 8.06e+00 1acp a.28.1.1 16931 1axcA 261 8.15e+00 1plq d.131.1.2 41392 d.131.1.2 41393 1nriA 306 9.42e+00 c.80.1.3 86123 1dnlA 199 1.04e+01 1ci0A b.45.1.1 25753 1g79A 218 1.11e+01 1ci0A b.45.1.1 25752 1m5yA 408 1.19e+01 a.167.1.1 78664 d.26.1.1 78665 d.26.1.1 78666 1nfdE 212 1.27e+01 8fabA b.1.1.1 20186 b.1.1.2 21202 1wtlA 108 1.28e+01 8fabA b.1.1.1 20530 1sssA 205 1.28e+01 1avmA a.2.11.1 15738 d.44.1.1 38735 1h45A 334 1.29e+01 c.94.1.2 76674 1qhfA 240 1.29e+01 1qhfA c.60.1.1 33960 5pgmA 246 1.31e+01 1qhfA c.60.1.1 33962 1biy 689 1.33e+01 1cb6A c.94.1.2 35863 c.94.1.2 35864 1ce2A 689 1.34e+01 1cb6A c.94.1.2 35861 c.94.1.2 35862 1k8fA 157 1.38e+01 b.80.5.1 84344 1i3uA 126 1.42e+01 1gc1H b.1.1.1 61636 1i3vA 129 1.42e+01 1gc1H b.1.1.1 61637 1xvaA 292 1.44e+01 1xvaA c.66.1.5 34183 1g1eB 89 1.47e+01 1g1eB a.59.1.1 17931 1olsB 342 1.48e+01 1olxB 342 1.48e+01 1e6vC 258 1.52e+01 1mroC d.58.31.1 39439 1qntA 176 1.53e+01 1sfe a.4.2.1 16074 c.55.7.1 33749 1dp4A 435 1.54e+01 1dp4A c.93.1.1 35710 1jp4A 308 1.61e+01 1jp4A e.7.1.1 63223 1rwsA 77 1.62e+01 1squA 155 1.68e+01 1d2gA 292 1.68e+01 1xvaA c.66.1.5 34187 1r8oB 71 1.70e+01 1q48A 134 1.75e+01 1eh6A 207 1.77e+01 1sfe a.4.2.1 16076 c.55.7.1 33751 1eh8A 206 1.77e+01 1sfe a.4.2.1 16077 c.55.7.1 33752 1n1jB 97 1.79e+01 a.22.1.3 79814 2hfh 109 1.83e+01 2hfh a.4.5.14 16145 2hdcA 97 1.93e+01 2hfh a.4.5.14 16146 1jenA 266 1.99e+01 1jenA 1kwmA 402 2.03e+01 c.56.5.1 73079 d.58.3.1 73080 1dtzA 689 2.08e+01 1cb6A c.94.1.2 59134 c.94.1.2 59135 1puoA 170 2.09e+01 1g1sA 162 2.11e+01 d.169.1.1 65100 g.3.11.1 65101 1t2aA 375 2.14e+01 1i7bA 266 2.23e+01 1jenA 1rlhA 173 2.27e+01 1hx1B 114 2.34e+01 1hx1B a.7.7.1 61350 1p0yA 444 2.36e+01 a.166.1.1 87654 b.85.7.3 87655 1p85Q 110 2.39e+01 i.1.1.1 87885 1f80D 80 2.41e+01 1acp a.28.1.1 59686 1hwmB 266 2.42e+01 1abrB b.42.2.1 25569 b.42.2.1 25570 1eh3A 334 2.44e+01 1nnt c.94.1.2 35842 1dsn 333 2.45e+01 1cb6A c.94.1.2 35837 1k6nL 281 2.51e+01 f.26.1.1 72090 1vfd 330 2.52e+01 1cb6A c.94.1.2 35855 2frvA 264 2.53e+01 2frvA e.19.1.1 43303 1lct 333 2.57e+01 1cb6A c.94.1.2 35836 1vfe 333 2.58e+01 1cb6A c.94.1.2 35854 1l5tA 332 2.58e+01 c.94.1.2 73601 1hse 334 2.59e+01 1cb6A c.94.1.2 35849 1h44A 334 2.61e+01 c.94.1.2 76673 1pstL 266 2.62e+01 6prcL f.26.1.1 43503 1e58A 249 2.64e+01 1qhfA c.60.1.1 59262 1rzhL 281 2.64e+01 1ystL 273 2.67e+01 6prcL f.26.1.1 43509 1qrhA 261 2.68e+01 1ckqA c.52.1.1 33232 1qpsA 261 2.68e+01 1ckqA c.52.1.1 33234 1h43A 334 2.71e+01 c.94.1.2 76672 1qriA 261 2.72e+01 1ckqA c.52.1.1 33233 1bn7A 294 2.73e+01 1bn6A c.69.1.8 34677 1qovL 281 2.74e+01 6prcL f.26.1.1 43455 1cqwA 295 2.76e+01 1b6g c.69.1.8 34679 1fnqL 281 2.77e+01 6prcL f.26.1.1 59918 1n40A 396 2.82e+01 a.104.1.1 79977 1cl8A 276 2.85e+01 1ckqA c.52.1.1 33230 1qupA 222 2.88e+01 1qupA b.1.8.1 22301 d.58.17.1 39352 1jh0L 281 2.91e+01 f.26.1.1 63036 1g1tA 157 2.91e+01 d.169.1.1 65104 g.3.11.1 65105 1f6nL 281 2.92e+01 6prcL f.26.1.1 59660 1kviA 79 2.96e+01 1noyA 388 2.97e+01 1clqA c.55.3.5 33713 1esl 162 2.97e+01 1esl d.169.1.1 42353 g.3.11.1 44225 1msvA 354 2.97e+01 d.156.1.1 85094 1frvA 264 3.05e+01 2frvA e.19.1.1 43308 1fnpL 281 3.10e+01 6prcL f.26.1.1 59914 1sqyA 691 3.11e+01 1jk9B 249 3.13e+01 b.1.8.1 63150 d.58.17.1 63151 1ij5A 323 3.21e+01 a.39.1.9 76748 1h8lA 380 3.83e+01 b.3.2.1 65737 c.56.5.1 65738 1cb6A 691 3.88e+01 1cb6A c.94.1.2 35840 c.94.1.2 35841 1b0lA 691 3.88e+01 1cb6A c.94.1.2 35847 c.94.1.2 35848 1fckA 692 3.88e+01 1cb6A c.94.1.2 35843 c.94.1.2 35844 1n76A 690 3.89e+01 c.94.1.2 80226 c.94.1.2 80227 1qgdA 662 3.93e+01 c.36.1.6 88367 c.36.1.10 88368 c.48.1.1 88369 1lfi 691 3.98e+01 1cb6A c.94.1.2 35850 c.94.1.2 35851 1kewA 361 3.98e+01 c.2.1.2 68544