# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nfjA 89 3.30e-19 1h0xA 100 4.09e-18 d.68.6.1 76451 1nh9A 87 5.77e-18 1udvA 89 9.14e-09 1ml8A 134 1.06e+00 d.227.1.2 85013 1r7aA 504 1.08e+00 1j5xA 342 1.57e+00 c.80.1.1 71591 1draA 159 2.48e+00 1vdrA c.71.1.1 34831 1fbaA 361 3.23e+00 1fbaA c.1.10.1 29120 1jmkC 230 3.39e+00 c.69.1.22 71747 1bu5A 147 3.88e+00 5nul c.23.5.1 31155 1j9eA 147 3.91e+00 c.23.5.1 62756 2fx2 147 4.08e+00 1rcf c.23.5.1 31158 1f4pA 147 4.14e+00 5nul c.23.5.1 59651 1e58A 249 4.34e+00 1qhfA c.60.1.1 59262 1nwaA 203 4.44e+00 d.58.28.1 86295 1olsB 342 4.46e+00 1v1rB 342 4.59e+00 1hq3B 126 4.64e+00 1aoiD a.22.1.1 16444 1xyzA 347 4.69e+00 1taxA c.1.8.3 28804 1gy8A 397 4.90e+00 c.2.1.2 83376 1nzjA 298 5.07e+00 1j5rA 371 5.99e+00 2pia 321 6.20e+00 2pia b.43.4.2 25663 c.25.1.2 31553 d.15.4.2 37704 1odkA 235 6.20e+00 c.56.2.1 86863 1dtwB 342 7.34e+00 1qs0B c.36.1.7 31828 c.48.1.2 33102 1seiA 130 7.38e+00 1seiA d.140.1.1 41463 6dfr 159 8.03e+00 1vdrA c.71.1.1 34874 1ra9 159 8.28e+00 1vdrA c.71.1.1 34820 1aky 221 8.68e+00 1zin c.37.1.1 31896 g.41.2.1 45197 1i50K 120 8.82e+00 d.74.3.2 61765 1lxnA 99 8.83e+00 d.58.48.1 84737 1bq3B 246 8.92e+00 1qhfA c.60.1.1 33979 1px5A 349 9.68e+00 1j3mA 129 9.97e+00 1k4nA 192 1.02e+01 d.32.1.5 72059 1i1gA 141 1.05e+01 a.4.5.32 65982 d.58.4.2 65983 1akr 147 1.09e+01 1rcf c.23.5.1 31152 1gveA 327 1.15e+01 c.1.7.1 70597 1d1gA 168 1.23e+01 1d1gA c.71.1.1 34889 1h1wA 289 1.25e+01 d.144.1.7 83460 2bby 69 1.26e+01 2bby a.4.5.15 16148 1cz3A 168 1.29e+01 1d1gA c.71.1.1 34891 1j1qA 261 1.32e+01 1rlkA 117 1.34e+01 1nijA 318 1.38e+01 c.37.1.10 85741 d.237.1.1 85742 1bby 69 1.41e+01 2bby a.4.5.15 16149 1bpb 248 1.41e+01 1bpyA a.60.12.1 75811 d.218.1.2 75812 1rpl 251 1.43e+01 1bpyA a.60.12.1 75933 d.218.1.2 75934 1cf2O 337 1.47e+01 1b7gO c.2.1.3 29994 d.81.1.1 39909 1bpyA 335 1.48e+01 1bpyA a.60.6.1 17980 a.60.12.1 75819 d.218.1.2 75820 1vhwA 253 1.50e+01 1t2aA 375 1.51e+01 1q8rA 120 1.53e+01 1uu3A 310 1.56e+01 1qhfA 240 1.58e+01 1qhfA c.60.1.1 33960 1qgoA 264 1.59e+01 1qgoA c.92.1.2 35596 1vk9A 151 1.59e+01 1ik6A 369 1.60e+01 c.36.1.7 66174 c.48.1.2 66175 1wba 175 1.61e+01 1wba b.42.4.1 25591 1cp2A 269 1.66e+01 1cp2A c.37.1.10 32269 1jubA 311 1.67e+01 1sphA 88 1.69e+01 1ptf d.94.1.1 40544 1kzhA 555 1.70e+01 c.89.1.1 73361 1l3iA 192 1.75e+01 c.66.1.22 77676 1gikA 261 1.75e+01 1nxcA 478 1.79e+01 1jo0A 98 1.79e+01 d.68.4.1 77140 1i4jA 110 1.80e+01 d.55.1.1 76734 1qm4A 396 1.82e+01 1mxb d.130.1.1 41350 d.130.1.1 41351 d.130.1.1 41352 1kvdB 77 1.83e+01 1kveB 1kveB 77 1.83e+01 1kveB 1bn7A 294 1.84e+01 1bn6A c.69.1.8 34677 1cqwA 295 1.88e+01 1b6g c.69.1.8 34679 1m5yA 408 1.93e+01 a.167.1.1 78664 d.26.1.1 78665 d.26.1.1 78666 1bn6A 294 1.96e+01 1bn6A c.69.1.8 34678 2frvA 264 1.97e+01 2frvA e.19.1.1 43303 1ln4A 104 1.97e+01 d.68.4.1 74043 1oxkB 134 2.08e+01 1v54E 109 2.14e+01 2dorA 311 2.14e+01 2dorA c.1.4.1 28593 1luaA 287 2.21e+01 c.2.1.7 78216 c.58.1.4 78217 2occE 109 2.24e+01 2occE a.118.11.1 19224 1nom 248 2.25e+01 1bpyA a.60.12.1 75929 d.218.1.2 75930 1io2A 213 2.27e+01 1ekeA c.55.3.1 62612 1bxeA 113 2.41e+01 1bxeA d.55.1.1 38898 1squA 155 2.45e+01 1o2dA 371 2.47e+01 e.22.1.2 86591 1hu4A 288 2.54e+01 1hu4A 1n5dA 288 2.54e+01 c.2.1.2 80030 1qgdA 662 2.59e+01 c.36.1.6 88367 c.36.1.10 88368 c.48.1.1 88369 1b65A 375 2.61e+01 1b65A d.154.1.1 42020 1oi7A 288 2.64e+01 c.2.1.8 87049 c.23.4.1 87050 1dorA 311 2.74e+01 2dorA c.1.4.1 28595 1krhA 338 2.80e+01 b.43.4.2 72891 c.25.1.2 72892 d.15.4.2 72893 1kmiZ 214 2.83e+01 h.4.11.1 72752 1p42A 270 3.01e+01 d.14.1.7 87754 d.14.1.7 87755 3grx 82 3.15e+01 1aba c.47.1.1 32769 1lct 333 3.16e+01 1cb6A c.94.1.2 35836 1cb6A 691 3.27e+01 1cb6A c.94.1.2 35840 c.94.1.2 35841 1pwhA 327 3.34e+01 3pgm 241 3.34e+01 1qhfA c.60.1.1 33982 1s4qA 228 3.34e+01 1a8s 273 3.37e+01 1brt c.69.1.12 34710 1k75A 434 3.40e+01 c.82.1.2 68253 1d5wC 126 3.41e+01 1dbwA c.23.1.1 31101 1dckA 126 3.41e+01 1dbwA c.23.1.1 31097 1dbwA 126 3.46e+01 1dbwA c.23.1.1 31095 1iatA 557 3.51e+01 1dqrA c.80.1.2 62123 1kaeA 434 3.59e+01 c.82.1.2 72247 1eqtA 68 3.61e+01 1b3aA d.9.1.1 37412 1b3aA 67 3.61e+01 1b3aA d.9.1.1 37410 1hyeA 313 3.68e+01 2cmd c.2.1.5 61400 d.162.1.1 61401 2hfh 109 3.77e+01 2hfh a.4.5.14 16145 3ldh 330 3.83e+01 3ldh i.12.1.1 46015 1vk0A 206 3.83e+01 1ctf 74 3.97e+01 1ctf d.45.1.1 38759 1jem 87 4.00e+01 1ptf d.94.1.1 40548