# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nfjA 89 9.38e-16 1h0xA 100 2.12e-14 d.68.6.1 76451 1nh9A 87 2.34e-14 1udvA 89 1.58e-07 1f66C 128 3.42e+00 1aoiC a.22.1.1 16442 6dfr 159 3.69e+00 1vdrA c.71.1.1 34874 1qupA 222 6.03e+00 1qupA b.1.8.1 22301 d.58.17.1 39352 1quqB 121 6.33e+00 1quqB b.40.4.3 25305 1ra9 159 6.54e+00 1vdrA c.71.1.1 34820 1n1jB 97 7.27e+00 a.22.1.3 79814 1squA 155 7.69e+00 1icfA 175 9.41e+00 1cs8A d.3.1.1 37067 1q48A 134 1.10e+01 1mv8A 436 1.19e+01 a.100.1.4 85128 c.2.1.6 85129 c.26.3.1 85130 1soxA 466 1.22e+01 1soxA b.1.18.6 21947 d.120.1.1 41090 d.176.1.1 42563 1rlkA 117 1.24e+01 1kit 757 1.39e+01 1kit b.29.1.8 24272 b.29.1.8 24273 b.68.1.1 27616 1i2oA 316 1.42e+01 1onrA c.1.10.1 61574 1obpA 159 1.49e+01 1obpA b.60.1.1 27092 1pzwA 80 1.56e+01 1onrA 316 1.61e+01 1onrA c.1.10.1 29169 1ab3 88 1.64e+01 1a32 a.16.1.2 16395 1j5xA 342 1.67e+01 c.80.1.1 71591 1lm8B 118 1.69e+01 d.15.1.1 74033 1d3bB 91 1.70e+01 1d3bB b.38.1.1 24804 1qvcA 145 1.79e+01 3ullA b.40.4.3 25284 1iae 200 1.80e+01 1iae d.92.1.8 40311 1qxoA 388 1.81e+01 1aurA 218 1.87e+01 1auoA c.69.1.14 34718 1ig5A 75 1.87e+01 4icb a.39.1.1 62363 1ast 200 1.95e+01 1iae d.92.1.8 40310 1gt1A 159 2.02e+01 1hn2A 159 2.02e+01 b.60.1.1 65890 1auoA 218 2.06e+01 1auoA c.69.1.14 34716 1n3kA 130 2.06e+01 a.77.1.4 79965 1iab 200 2.07e+01 1iae d.92.1.8 40312 1emsA 440 2.07e+01 1emsA d.13.1.1 37520 d.160.1.1 42086 1on2A 142 2.08e+01 a.4.5.24 87103 a.76.1.1 87104 1jykA 254 2.08e+01 c.68.1.13 67458 1draA 159 2.20e+01 1vdrA c.71.1.1 34831 1jipA 403 2.21e+01 a.104.1.1 66748 1l0iA 78 2.39e+01 a.28.1.1 77643 1i3uA 127 2.44e+01 1gc1H b.1.1.1 61636 1eupA 403 2.47e+01 1rom a.104.1.1 18967 1vcbA 118 2.54e+01 1vcbA d.15.1.1 37603 3fivA 116 2.70e+01 1fmb b.50.1.1 26768 1j1nA 492 2.74e+01 c.94.1.1 83978 3icb 75 2.75e+01 4icb a.39.1.1 17147 1t2aA 375 2.82e+01 1a3c 181 2.88e+01 1a3c c.61.1.1 34095 1kwhA 492 2.93e+01 c.94.1.1 68876 2bby 69 2.96e+01 2bby a.4.5.15 16148 1jvr 137 3.19e+01 1jvr a.61.1.2 18132 1bby 69 3.25e+01 2bby a.4.5.15 16149 2fivA 116 3.45e+01 1fmb b.50.1.1 26766 1jc7A 131 3.46e+01 1jc7A b.40.3.2 62873 1g1sA 162 3.48e+01 d.169.1.1 65100 g.3.11.1 65101 1lct 333 3.51e+01 1cb6A c.94.1.2 35836 1mr8A 93 3.68e+01 1b4cA a.39.1.2 17186 1oxa 403 3.74e+01 1f4tA a.104.1.1 18965 1jenA 267 3.86e+01 1jenA 1us6A 102 3.96e+01 1fivA 113 3.99e+01 1fmb b.50.1.1 26764