(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0205 At2g34160, Arabidopsis
                 10             20         30        40         50     
                 |              |          |         |          |     
   1 ...SEEITDGVNNMNLATDS.....QKKNRI.QVSNTKKPLFFYVNLAK.RYMQQYNDVELSALG
   2 ...MEEITDGVNNMNLATDS.....QKKNRI.QVSNTKKPLFFYVNLAK.RYMQQYNDVELSALG
   3 ...MEEITEGVNNMNLAVDT.....QKKNRI.QVSNTKKPLFFYVNLAK.RYMQQYTDVELSALG
   4 ...MEEVTEAVGNLTIAAGEa11eaHKKNRI.QVSNTKKPLFFYVNLAK.RYMQLHNEVELSALG
   5 ma.VEEITEGVRNLAVEGEPa20agSSSNRI.QVSNTKKPLFFYVNLAK.RYMQQHGDVELSALG
   6 serNIVLAPATTTTTATVET.....HKKNRI.QVSNTKKPLFFYVNLAK.RYIQQHNEVELSALG
   7 ...----------MSA---E.....NGGNAIvRVSSNKRK-FGYVDYTKhRLHEGYPEVIVSALG
   8 ...----------MSA---E.....NGGNAIvRVSSNKRK-FGYVDYTKhRLHEGYPEVIISALG


         60        70         80        90       100       110         
         |         |          |         |         |         |         
   1 MAIATVVTVTEILKNNGFAVE.KKIMTSIVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAAN.
   2 MAIATVVTVTEILKNNGFAVE.KKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAAN.
   3 MAIATVVTVAEILKNNGFAVE.KKIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDELMAAAN.
   4 MAIATVVTVAEILKNNGLAVE.KKIMTSTVDVKDDSRSRPMQKAKIEIVLGKTDKFDELMAAAA.
   5 MAIATVVTVAEILKNNGFAVE.KKIRTSTVEINDESRVRPLQKAKIEIVLEKSEKFDELMAAAA.
   6 MAITTVVTISEILKNNGLATE.KKVLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLVPPVTn
   7 TAIADAVSVVELLKNQG-VVEvKKICTSRAQF-DDVRSTTTD--KIEVVVVKSPEFDAIYEQQQ.
   8 TAIADAVSVVELLKNQG-VVEvKKICTSRAQF-DDVRSTTTD--KIEVVVVKSPEFDAIYEQQQ.


         120       130    
          |         |    
   1 ....EEKEDAETQVQN....
   2 ....EEKEDAEAQVQN....
   3 ....EEKEAAEAQEQN....
   4 ....EEREAAAAEAEAeeq.
   5 ....EEREAAEAEEQA....
   6 gktpEEEASAETEASVeaq.
   7 ....KDREIAKARAEAgea.
   8 ....KDREIAKARAEAget.