# List of top-scoring protein chains for T0205.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nfjA 89 1.48e-04 1nh9A 87 2.06e-04 1h0xA 100 3.62e-03 d.68.6.1 76451 1k8fA 157 2.72e-01 b.80.5.1 84344 1iruB 233 3.08e-01 d.153.1.4 71353 1vhwA 253 3.35e-01 1df0A 700 7.53e-01 1dkvA a.39.1.8 17375 b.14.1.1 23674 d.3.1.3 37106 1vaoA 560 9.85e-01 1qltA d.58.32.1 39461 d.145.1.1 41724 1dznA 560 1.00e+00 1qltA d.58.32.1 39471 d.145.1.1 41734 1e8gA 560 1.01e+00 1qltA d.58.32.1 39455 d.145.1.1 41718 1e0yA 560 1.01e+00 1qltA d.58.32.1 39467 d.145.1.1 41730 1qltA 560 1.01e+00 1qltA d.58.32.1 39457 d.145.1.1 41720 1lpbB 449 1.65e+00 1gpl b.12.1.2 23643 c.69.1.19 34791 1n1jB 97 2.25e+00 a.22.1.3 79814 1bby 69 2.70e+00 2bby a.4.5.15 16149 1g3kA 174 3.24e+00 1nedA d.153.1.4 41989 1lkvX 232 5.30e+00 a.118.14.1 73980 1fmd2 218 6.04e+00 1qqp2 1noyA 388 7.10e+00 1clqA c.55.3.5 33713 1p3dA 475 7.29e+00 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730 1mveA 243 8.61e+00 b.29.1.2 85140 1bha 71 8.77e+00 1c3wA j.35.1.1 46238 1h12A 405 9.61e+00 a.102.1.2 83447 1h14A 405 9.63e+00 a.102.1.2 83449 1odkA 235 1.02e+01 c.56.2.1 86863 1h4vB 421 1.03e+01 1adjA c.51.1.1 60624 d.104.1.1 60625 1r5pA 108 1.04e+01 1kqfA 1015 1.25e+01 b.52.2.2 72871 c.81.1.1 72872 1j36A 607 1.28e+01 d.92.1.5 84054 1bt0A 76 1.29e+01 1ubi d.15.1.1 37607 3lynA 136 1.30e+01 1lis a.19.1.1 16413 1krhA 338 1.31e+01 b.43.4.2 72891 c.25.1.2 72892 d.15.4.2 72893 1mhdA 132 1.31e+01 1mhdA d.164.1.1 42175 1aec 218 1.32e+01 1cs8A d.3.1.1 37003 1ozjA 144 1.34e+01 1l0iA 78 1.39e+01 a.28.1.1 77643 1h3fA 432 1.41e+01 c.26.1.1 76631 d.66.1.4 76632 1r0uA 148 1.43e+01 1l0hA 78 1.48e+01 a.28.1.1 77642 1acp 77 1.48e+01 1acp a.28.1.1 16931 1ea7A 310 1.50e+01 c.41.1.1 70086 1h3dA 299 1.51e+01 1kfuL 699 1.55e+01 a.39.1.8 68571 b.14.1.1 68572 d.3.1.3 68573 1g2iA 166 1.60e+01 1g2iA c.23.16.2 31438 1lf9B 674 1.62e+01 a.102.1.5 77924 b.30.5.5 77925 1lf6A 684 1.64e+01 a.102.1.5 77918 b.30.5.5 77919 1nbaA 264 1.80e+01 1nbaA c.33.1.1 31753 1dmhA 311 2.04e+01 1dmhA b.3.6.1 22633 1frfL 564 2.15e+01 1h2rL e.18.1.1 43300 1c4xA 285 2.17e+01 1c4xA c.69.1.10 34684 1r4fA 339 2.18e+01 1e94A 175 2.25e+01 1nedA d.153.1.4 41977 1nedA 183 2.26e+01 1nedA d.153.1.4 41974 3pgmA 244 2.31e+01 1ul3A 112 2.38e+01 1llc 325 2.41e+01 1hyhA c.2.1.5 30176 d.162.1.1 42143 1cr5A 189 2.55e+01 1cr5A b.52.2.3 26931 d.31.1.1 38465 1uisA 230 2.56e+01 1kicA 339 2.57e+01 c.70.1.1 72510 1gvzA 237 2.58e+01 b.47.1.2 76360 1hozA 339 2.60e+01 c.70.1.1 65898 2pia 321 2.70e+01 2pia b.43.4.2 25663 c.25.1.2 31553 d.15.4.2 37704 1m0kA 262 2.86e+01 f.13.1.1 78344 1rp5A 702 2.88e+01 1nddA 76 2.89e+01 1ubi d.15.1.1 37599 1v6sA 390 2.90e+01 1s1hQ 76 2.92e+01 1hbrA 141 3.00e+01 1abwA a.1.1.2 15392 1pd21 199 3.14e+01 1pd21 1iy9A 275 3.29e+01 c.66.1.17 76943 1ry4A 128 3.31e+01 1rypA 243 3.43e+01 1pmaA d.153.1.4 41932 1khbA 625 3.44e+01 c.91.1.1 68606 c.109.1.1 68607 1g0uG 252 3.53e+01 d.153.1.4 41952 1pxsA 249 3.54e+01 1kgbA 231 3.56e+01 f.13.1.1 68581 1qqp2 218 3.56e+01 1qqp2 1cwqA 248 3.58e+01 1c3wA f.13.1.1 43412 1jr7A 311 3.60e+01 b.82.2.3 63255 1r84A 232 3.60e+01 1pxrA 249 3.62e+01 1mkdA 328 3.62e+01 a.125.1.1 84982 1p8uA 249 3.64e+01 f.13.1.1 87983 1jv6A 249 3.68e+01 f.13.1.1 67346 1mgyA 249 3.71e+01 f.13.1.1 84959 1kfuS 184 3.72e+01 a.39.1.8 68574 1p8iA 249 3.74e+01 f.13.1.1 87945 1q5jA 249 3.75e+01 1brrA 247 3.76e+01 1c3wA f.13.1.1 43421 1c8rA 249 3.76e+01 1c3wA f.13.1.1 43407 1qhjA 248 3.77e+01 1c3wA f.13.1.1 43409 1p8hA 249 3.77e+01 f.13.1.1 87944 1q5iA 249 3.81e+01 1c8sA 196 3.86e+01 1c3wA f.13.1.1 43410 1pbyA 489 3.91e+01 1omwA 689 3.97e+01 a.91.1.1 87086 b.55.1.1 87087 d.144.1.7 87088 1fbkA 248 3.98e+01 1c3wA f.13.1.1 43426 1qqjA 419 3.99e+01 1qcnA b.34.8.1 59034 d.177.1.1 59035 1rkoA 334 3.99e+01