# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nfjA 89 9.61e-05 1nh9A 87 3.04e-03 1ukkA 142 3.64e-03 1ml8A 134 1.47e-02 d.227.1.2 85013 1i50K 120 3.68e-02 d.74.3.2 61765 1udvA 89 9.26e-02 1qwiA 143 1.20e-01 1g60A 260 4.54e-01 c.66.1.11 70151 1hn2A 159 4.58e-01 b.60.1.1 65890 1gt1A 159 4.62e-01 1obpA 159 5.14e-01 1obpA b.60.1.1 27092 1jd1A 129 5.81e-01 1qu9A d.79.1.1 62890 1gnyA 153 6.43e-01 b.18.1.11 65404 3fivA 116 6.53e-01 1fmb b.50.1.1 26768 1avqA 228 6.70e-01 1avqA c.52.1.13 33326 4fiv 113 7.39e-01 1fmb b.50.1.1 26762 1sgoA 139 9.69e-01 1oniA 137 1.01e+00 d.79.1.1 87144 1regX 122 1.38e+00 1regX d.58.27.1 39406 1qahA 136 1.64e+00 1qu9A 128 1.68e+00 1qu9A d.79.1.1 39755 1fs0E 138 2.17e+00 1aqt a.2.10.1 59997 b.93.1.1 59998 1hi2A 135 2.22e+00 7rsa d.5.1.1 61057 1lci 550 2.36e+00 1lci e.23.1.1 43349 1gqvA 135 2.36e+00 d.5.1.1 70376 1n2fA 142 2.51e+00 d.227.1.1 79853 1pcfA 66 2.89e+00 1pcfA d.18.1.1 38142 2mspA 126 2.93e+00 1mspA b.1.11.2 22335 1h1wA 289 3.30e+00 d.144.1.7 83460 1rg9A 383 3.42e+00 1no5A 114 3.68e+00 1nwaA 203 4.24e+00 d.58.28.1 86295 1uu3A 310 4.49e+00 1jhsA 188 5.77e+00 d.107.1.1 84172 1bpyA 335 6.26e+00 1bpyA a.60.6.1 17980 a.60.12.1 75819 d.218.1.2 75820 1uspA 139 6.58e+00 1mspA 126 7.60e+00 1mspA b.1.11.2 22333 1dytA 133 7.61e+00 7rsa d.5.1.1 37288 1qd9A 124 7.63e+00 1qu9A d.79.1.1 39758 1bvoA 175 8.02e+00 1a3qA b.2.5.3 22457 1nh1A 330 8.36e+00 1bjaA 95 9.27e+00 1bjaA a.4.5.9 16122 1kptA 105 1.03e+01 1kptA d.70.1.1 39588 1k4nA 192 1.05e+01 d.32.1.5 72059 1rowA 109 1.08e+01 1ukuA 102 1.08e+01 1p1lA 102 1.09e+01 d.58.5.2 87695 1icxA 155 1.11e+01 d.129.3.1 71191 1uch 230 1.12e+01 1uch d.3.1.6 37129 1huqA 164 1.18e+01 1byuA c.37.1.8 32020 1ek0A 170 1.29e+01 1ctqA c.37.1.8 32076 1eg2A 319 1.33e+01 1eg2A c.66.1.11 34249 1a8h 500 1.34e+01 1a8h a.27.1.1 16922 c.26.1.1 31589 1feuA 206 1.37e+01 1feuA b.53.1.1 59801 1dynA 125 1.42e+01 1dynA b.55.1.1 26955 1seiA 130 1.47e+01 1seiA d.140.1.1 41463 1j5yA 187 1.56e+01 a.4.5.1 71592 d.94.2.1 71593 1vhzA 198 1.60e+01 1m2rA 327 1.61e+01 d.144.1.7 84760 1amuA 563 1.67e+01 1amuA e.23.1.1 43351 1kutA 230 1.69e+01 d.143.1.1 73017 1ko6A 187 1.74e+01 b.119.1.1 77471 1lqpA 135 1.76e+01 d.32.1.2 78151 1r2qA 170 1.80e+01 1air 353 1.82e+01 1air b.80.1.1 28018 1i6iA 366 1.84e+01 1bg2 c.37.1.9 61844 1fsoA 139 1.91e+01 1rhoA b.1.18.8 60007 1nd4A 264 1.91e+01 1kkeA 210 1.95e+01 b.21.1.2 68669 b.83.1.2 68670 1dz4A 414 1.97e+01 1phd a.104.1.1 18903 1o88A 353 1.99e+01 b.80.1.1 81178 1nzaA 103 2.01e+01 d.58.5.2 86444 1nkiA 135 2.05e+01 1rztA 331 2.08e+01 1qmqA 414 2.10e+01 1phd a.104.1.1 18907 1bmv2 374 2.13e+01 1bmv2 1dwnA 127 2.20e+01 1dwnA d.85.1.1 40141 1ehxA 94 2.20e+01 1ehxA b.1.18.13 21950 1fit 147 2.32e+01 1fit d.13.1.1 37499 1psdA 409 2.33e+01 1psdA c.2.1.4 30097 c.23.12.1 31357 d.58.18.1 39354 1hnf 182 2.38e+01 1qa9A b.1.1.1 19741 b.1.1.3 21680 1j7gA 144 2.41e+01 c.110.1.1 84130 2bopA 85 2.42e+01 2bopA d.58.8.1 39217 1f97A 212 2.46e+01 1f97A b.1.1.1 19763 b.1.1.4 21764 1q0vA 81 2.48e+01 1uolA 219 2.49e+01 1kx5D 125 2.55e+01 a.22.1.1 77596 1fxlA 167 2.57e+01 1b7fA d.58.7.1 39183 d.58.7.1 39184 1br9 194 2.57e+01 1br9 b.40.3.1 25235 1q0bA 367 2.65e+01 1c7kA 132 2.65e+01 1kuh d.92.1.1 59078 1g13A 162 2.77e+01 1g13A b.95.1.1 60194 2ltnA 181 2.88e+01 1led b.29.1.1 24024 1rypL 212 3.02e+01 d.153.1.4 41880 1mzbA 136 3.11e+01 1om1A 332 3.17e+01 1hw7A 255 3.21e+01 1i7fA d.193.1.1 61297 1ravA 127 3.22e+01 1swuA b.61.1.1 27409 1bm9A 122 3.25e+01 1bm9A a.4.5.7 16116 1kuh 132 3.27e+01 1kuh d.92.1.1 40258 1l5xA 280 3.35e+01 c.106.1.1 77718 1m1sA 116 3.42e+01 b.1.11.2 84747 1pyaA 81 3.48e+01 1pyaA d.155.1.1 42026 1dq3A 454 3.56e+01 1dq3A b.86.1.2 28380 d.50.3.1 38798 d.95.2.2 40585 d.95.2.2 40586 1vhwA 253 3.71e+01 1jkeA 145 3.73e+01 c.110.1.1 66791 1jb7B 260 3.79e+01 1otcB b.40.4.3 62839 1fm2A 169 3.87e+01 1fm2A d.153.1.2 59877 1msc 129 3.89e+01 1msc d.85.1.1 40039 1bebA 162 3.95e+01 1bebA b.60.1.1 27115 1p6oA 161 3.97e+01 2fhi 147 3.98e+01 1fit d.13.1.1 37505