# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nfjA 89 3.52e-04 1ml8A 134 3.07e-01 d.227.1.2 85013 1nh9A 87 3.19e-01 1vhwA 253 4.02e-01 1bby 69 1.09e+00 2bby a.4.5.15 16149 1h1wA 289 1.34e+00 d.144.1.7 83460 1uz5A 402 2.07e+00 1hzpA 335 2.50e+00 1hn9A c.95.1.1 61455 c.95.1.1 61456 1nbaA 264 2.50e+00 1nbaA c.33.1.1 31753 1uu3A 310 2.90e+00 1bvyF 191 2.93e+00 1bvyF c.23.5.1 31207 1ukkA 142 3.35e+00 1mzjA 339 3.91e+00 c.95.1.1 79700 c.95.1.1 79701 1krhA 338 4.17e+00 b.43.4.2 72891 c.25.1.2 72892 d.15.4.2 72893 1avqA 228 4.39e+00 1avqA c.52.1.13 33326 1dtdA 303 4.48e+00 1aye c.56.5.1 33823 1oi2A 366 5.30e+00 c.32.1.2 87039 d.79.2.2 87040 1jqeA 292 6.41e+00 c.66.1.19 71789 1wba 175 7.84e+00 1wba b.42.4.1 25591 1nwaA 203 8.00e+00 d.58.28.1 86295 1ko3A 230 9.16e+00 1r9dA 787 9.23e+00 1k3tA 359 9.33e+00 c.2.1.3 72022 d.81.1.1 72023 1jmkC 230 1.18e+01 c.69.1.22 71747 1noyA 388 1.19e+01 1clqA c.55.3.5 33713 1seiA 130 1.32e+01 1seiA d.140.1.1 41463 1jq5A 370 1.48e+01 e.22.1.2 67084 1q8rA 120 1.59e+01 1om1A 332 1.64e+01 1dz4A 414 1.68e+01 1phd a.104.1.1 18903 1pyaB 228 1.76e+01 1pyaB 1jeyA 609 1.83e+01 1jeqA e.31.1.1 62924 1nb9A 147 1.99e+01 b.43.5.1 85515 1m0kA 262 2.03e+01 f.13.1.1 78344 2pia 321 2.09e+01 2pia b.43.4.2 25663 c.25.1.2 31553 d.15.4.2 37704 1qmqA 414 2.14e+01 1phd a.104.1.1 18907 1ka8A 100 2.21e+01 a.4.5.20 72241 1bu6O 501 2.43e+01 1glcG c.55.1.4 33499 c.55.1.4 33500 1bpyA 335 2.49e+01 1bpyA a.60.6.1 17980 a.60.12.1 75819 d.218.1.2 75820 1tif 78 2.54e+01 1tif d.15.8.1 37836 1px5A 349 2.54e+01 1or4A 178 2.63e+01 1f7uA 607 2.64e+01 1bs2A a.27.1.1 59673 c.26.1.1 59674 d.67.2.1 59675 1vk4A 298 2.68e+01 1glcG 501 2.85e+01 1glcG c.55.1.4 33519 c.55.1.4 33520 1kexA 155 2.93e+01 b.18.1.2 77350 1m2rA 327 3.18e+01 d.144.1.7 84760 1n27A 96 3.21e+01 1gh9A 71 3.27e+01 1gh9A g.41.6.1 45266 1nnwA 252 3.29e+01 d.159.1.5 80674 1dnlA 199 3.29e+01 1ci0A b.45.1.1 25753 1g60A 260 3.30e+01 c.66.1.11 70151 1ncwH 222 3.33e+01 b.1.1.1 85555 b.1.1.2 85556 1t82A 155 3.37e+01 1edt 271 3.41e+01 2ebn c.1.8.5 28993 2camA 127 3.52e+01 1swuA b.61.1.1 27407 1c7sA 858 3.59e+01 1qba b.1.18.2 21812 b.2.2.3 22408 c.1.8.6 29011 d.92.2.1 40410 1b9uA 34 3.60e+01 1b9uA j.35.1.1 46260 1nqnA 122 3.69e+01 b.61.1.1 86042 1acf 125 3.75e+01 3nul d.110.1.1 40882 1ravA 127 3.78e+01 1swuA b.61.1.1 27409 1bt0A 76 3.79e+01 1ubi d.15.1.1 37607 1fnoA 417 3.80e+01 c.56.5.4 75841 d.58.19.1 70145 2ptd 298 3.95e+01 2plc c.1.18.2 29605