# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nfjA 89 5.04e-05 1nh9A 87 5.33e-04 1vhwA 253 2.70e-01 1ml8A 134 4.16e-01 d.227.1.2 85013 1jeyA 609 5.49e-01 1jeqA e.31.1.1 62924 1odkA 235 7.31e-01 c.56.2.1 86863 1udvA 89 8.48e-01 1nbaA 264 9.45e-01 1nbaA c.33.1.1 31753 1ukkA 142 1.15e+00 1krhA 338 1.94e+00 b.43.4.2 72891 c.25.1.2 72892 d.15.4.2 72893 1bby 69 2.26e+00 2bby a.4.5.15 16149 1hzpA 335 2.41e+00 1hn9A c.95.1.1 61455 c.95.1.1 61456 1nwaA 203 2.72e+00 d.58.28.1 86295 2pia 321 3.08e+00 2pia b.43.4.2 25663 c.25.1.2 31553 d.15.4.2 37704 1avqA 228 3.16e+00 1avqA c.52.1.13 33326 1uu3A 310 3.22e+00 1bt0A 76 3.93e+00 1ubi d.15.1.1 37607 1h1wA 289 4.04e+00 d.144.1.7 83460 1nb9A 147 4.09e+00 b.43.5.1 85515 1q8rA 120 5.55e+00 1dtdA 303 5.56e+00 1aye c.56.5.1 33823 1vk9A 151 5.81e+00 1pyaB 228 7.03e+00 1pyaB 1dar 691 7.42e+00 1dar b.43.3.1 25707 c.37.1.8 32142 d.14.1.1 37547 d.58.11.1 39300 1jmkC 230 7.63e+00 c.69.1.22 71747 1mk4A 157 7.89e+00 d.108.1.1 84979 1kexA 155 8.18e+00 b.18.1.2 77350 1nddA 76 8.20e+00 1ubi d.15.1.1 37599 1ne2A 200 8.30e+00 c.66.1.32 85586 1m0kA 262 8.67e+00 f.13.1.1 78344 1imbA 277 8.67e+00 1imbA e.7.1.1 42957 1jq5A 370 8.76e+00 e.22.1.2 67084 1wba 175 9.16e+00 1wba b.42.4.1 25591 1oi2A 366 9.17e+00 c.32.1.2 87039 d.79.2.2 87040 1seiA 130 9.20e+00 1seiA d.140.1.1 41463 1dz4A 414 9.27e+00 1phd a.104.1.1 18903 1hyeA 313 9.84e+00 2cmd c.2.1.5 61400 d.162.1.1 61401 1bia 321 1.02e+01 1bia a.4.5.1 16083 b.34.1.1 24447 d.104.1.2 40787 2hhmA 276 1.21e+01 1imbA e.7.1.1 42955 1bvyF 191 1.26e+01 1bvyF c.23.5.1 31207 1fdr 248 1.27e+01 1fdr b.43.4.2 25653 c.25.1.1 31543 1jqeA 292 1.35e+01 c.66.1.19 71789 1cp2A 269 1.40e+01 1cp2A c.37.1.10 32269 1m2oA 768 1.45e+01 a.71.2.1 78480 b.2.8.1 78481 c.62.1.2 78482 d.109.2.1 78483 g.41.10.1 78484 1glcG 501 1.45e+01 1glcG c.55.1.4 33519 c.55.1.4 33520 1k3tA 359 1.49e+01 c.2.1.3 72022 d.81.1.1 72023 1qmqA 414 1.52e+01 1phd a.104.1.1 18907 1oywA 523 1.60e+01 1h3fA 432 1.66e+01 c.26.1.1 76631 d.66.1.4 76632 1jkxA 212 1.66e+01 c.65.1.1 66813 1regX 122 1.70e+01 1regX d.58.27.1 39406 1lt3A 240 1.71e+01 1lt3A d.166.1.1 42230 1rg9A 383 1.71e+01 1ijqA 316 1.77e+01 1ijqA b.68.5.1 62506 g.3.11.1 62507 1q4uA 151 1.81e+01 1qmeA 702 1.84e+01 1pmd d.11.1.1 37487 d.11.1.1 37488 d.175.1.1 42560 e.3.1.1 42769 1fnoA 417 1.85e+01 c.56.5.4 75841 d.58.19.1 70145 1uz5A 402 1.97e+01 1k1xA 659 1.99e+01 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1p6oA 161 2.07e+01 1noyA 388 2.07e+01 1clqA c.55.3.5 33713 2ptd 298 2.19e+01 2plc c.1.18.2 29605 1jenA 267 2.21e+01 1jenA 1dnlA 199 2.32e+01 1ci0A b.45.1.1 25753 1fi2A 201 2.32e+01 1fi2A b.82.1.2 59845 1g60A 260 2.42e+01 c.66.1.11 70151 1s5dA 240 2.44e+01 1b9uA 34 2.47e+01 1b9uA j.35.1.1 46260 1o65A 246 2.49e+01 1ko3A 230 2.54e+01 1bu6O 501 2.59e+01 1glcG c.55.1.4 33499 c.55.1.4 33500 1gh9A 71 2.65e+01 1gh9A g.41.6.1 45266 1ncwH 222 2.66e+01 b.1.1.1 85555 b.1.1.2 85556 1g3qA 237 2.67e+01 1hyqA c.37.1.10 60237 1uiuA 502 2.75e+01 1nr3A 122 2.77e+01 d.236.1.1 86092 1q1oA 98 2.87e+01 1bpyA 335 2.92e+01 1bpyA a.60.6.1 17980 a.60.12.1 75819 d.218.1.2 75820 1l1lA 739 3.04e+01 c.7.1.4 73470 1c3wA 222 3.06e+01 1c3wA f.13.1.1 43405 1dmhA 311 3.11e+01 1dmhA b.3.6.1 22633 1jysA 242 3.27e+01 c.56.2.1 77216 1ka8A 100 3.28e+01 a.4.5.20 72241 1ryp1 222 3.36e+01 1ryp1 1tif 78 3.39e+01 1tif d.15.8.1 37836 1ltsA 185 3.43e+01 1lt3A d.166.1.1 42229 1j7gA 144 3.61e+01 c.110.1.1 84130 1px5A 349 3.66e+01 1acf 125 3.80e+01 3nul d.110.1.1 40882 1al3 324 3.82e+01 1al3 c.94.1.1 35835 1rypJ 204 3.82e+01 d.153.1.4 41878 1fvzA 271 3.93e+01 1fvzA d.129.3.4 60050 1ag9A 175 3.98e+01 1rcf c.23.5.1 31178 2bopA 85 3.98e+01 2bopA d.58.8.1 39217