# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nfjA 89 9.96e-05 1nh9A 87 2.85e-03 1ml8A 134 2.81e-01 d.227.1.2 85013 1ukkA 142 4.49e-01 1udvA 89 5.07e-01 1vhwA 253 6.03e-01 1odkA 235 8.35e-01 c.56.2.1 86863 1h1wA 289 1.03e+00 d.144.1.7 83460 1dtdA 303 1.12e+00 1aye c.56.5.1 33823 2pia 321 1.14e+00 2pia b.43.4.2 25663 c.25.1.2 31553 d.15.4.2 37704 1uu3A 310 1.22e+00 1bvyF 191 1.33e+00 1bvyF c.23.5.1 31207 1jq5A 370 1.97e+00 e.22.1.2 67084 1nbaA 264 2.11e+00 1nbaA c.33.1.1 31753 1hzpA 335 2.23e+00 1hn9A c.95.1.1 61455 c.95.1.1 61456 1uz5A 402 2.44e+00 1jeyA 609 2.73e+00 1jeqA e.31.1.1 62924 1avqA 228 2.75e+00 1avqA c.52.1.13 33326 1jqeA 292 3.16e+00 c.66.1.19 71789 1wba 175 3.58e+00 1wba b.42.4.1 25591 1rztA 331 3.60e+00 1bpyA 335 3.84e+00 1bpyA a.60.6.1 17980 a.60.12.1 75819 d.218.1.2 75820 1oi2A 366 3.95e+00 c.32.1.2 87039 d.79.2.2 87040 1krhA 338 4.07e+00 b.43.4.2 72891 c.25.1.2 72892 d.15.4.2 72893 1seiA 130 4.24e+00 1seiA d.140.1.1 41463 1q8rA 120 5.47e+00 1nwaA 203 5.48e+00 d.58.28.1 86295 1pyaB 228 5.50e+00 1pyaB 1m0kA 262 6.14e+00 f.13.1.1 78344 1regX 122 6.58e+00 1regX d.58.27.1 39406 1rg9A 383 7.35e+00 1dz4A 414 7.48e+00 1phd a.104.1.1 18903 1bia 321 8.42e+00 1bia a.4.5.1 16083 b.34.1.1 24447 d.104.1.2 40787 1k3tA 359 8.62e+00 c.2.1.3 72022 d.81.1.1 72023 1g3qA 237 8.76e+00 1hyqA c.37.1.10 60237 1uolA 219 9.34e+00 1fi2A 201 9.46e+00 1fi2A b.82.1.2 59845 1qmqA 414 9.51e+00 1phd a.104.1.1 18907 1fnoA 417 9.71e+00 c.56.5.4 75841 d.58.19.1 70145 1tif 78 9.98e+00 1tif d.15.8.1 37836 1dar 691 1.00e+01 1dar b.43.3.1 25707 c.37.1.8 32142 d.14.1.1 37547 d.58.11.1 39300 1nb9A 147 1.07e+01 b.43.5.1 85515 1nr3A 122 1.07e+01 d.236.1.1 86092 1acf 125 1.15e+01 3nul d.110.1.1 40882 1jmkC 230 1.16e+01 c.69.1.22 71747 1jdw 423 1.19e+01 1jdw d.126.1.2 41129 1o65A 246 1.20e+01 1tupA 219 1.22e+01 1tupA b.2.5.2 22434 1kexA 155 1.23e+01 b.18.1.2 77350 1mqsA 671 1.28e+01 e.25.1.1 79414 1g60A 260 1.31e+01 c.66.1.11 70151 1oz9A 150 1.31e+01 1b65A 375 1.31e+01 1b65A d.154.1.1 42020 1ryp1 222 1.34e+01 1ryp1 1mk4A 157 1.35e+01 d.108.1.1 84979 1hyeA 313 1.37e+01 2cmd c.2.1.5 61400 d.162.1.1 61401 1gypA 358 1.37e+01 1dssG c.2.1.3 30004 d.81.1.1 39919 1imbA 277 1.47e+01 1imbA e.7.1.1 42957 1ne2A 200 1.51e+01 c.66.1.32 85586 1c3wA 222 1.53e+01 1c3wA f.13.1.1 43405 1px5A 349 1.54e+01 1glcG 501 1.57e+01 1glcG c.55.1.4 33519 c.55.1.4 33520 1oniA 137 1.58e+01 d.79.1.1 87144 1e4iA 447 1.59e+01 1e70M c.1.8.4 59225 1j8bA 112 1.61e+01 d.222.1.1 77101 2hhmA 276 1.67e+01 1imbA e.7.1.1 42955 1qhtA 775 1.68e+01 1tgoA c.55.3.5 33722 e.8.1.1 43011 2ptd 298 1.70e+01 2plc c.1.18.2 29605 1ko3A 230 1.74e+01 1ub9A 100 1.75e+01 1p6oA 161 1.76e+01 1qahA 136 1.95e+01 1bu6O 501 1.95e+01 1glcG c.55.1.4 33499 c.55.1.4 33500 1p3dA 475 2.06e+01 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730 1ukuA 102 2.09e+01 1i50K 120 2.13e+01 d.74.3.2 61765 1e58A 249 2.17e+01 1qhfA c.60.1.1 59262 1l1lA 739 2.20e+01 c.7.1.4 73470 1b9uA 34 2.32e+01 1b9uA j.35.1.1 46260 2bopA 85 2.34e+01 2bopA d.58.8.1 39217 1qmeA 702 2.35e+01 1pmd d.11.1.1 37487 d.11.1.1 37488 d.175.1.1 42560 e.3.1.1 42769 1m2oA 768 2.39e+01 a.71.2.1 78480 b.2.8.1 78481 c.62.1.2 78482 d.109.2.1 78483 g.41.10.1 78484 1q4uA 151 2.48e+01 2fokA 579 2.64e+01 2fokA a.4.5.12 16131 a.4.5.12 16132 a.4.5.12 16133 c.52.1.12 33323 1oywA 523 2.66e+01 1gh9A 71 2.67e+01 1gh9A g.41.6.1 45266 1qm4A 396 2.71e+01 1mxb d.130.1.1 41350 d.130.1.1 41351 d.130.1.1 41352 1cp2A 269 2.71e+01 1cp2A c.37.1.10 32269 1c7kA 132 2.71e+01 1kuh d.92.1.1 59078 1kuh 132 2.72e+01 1kuh d.92.1.1 40258 1atiA 505 2.91e+01 1atiA c.51.1.1 33196 d.104.1.1 40745 1adoA 363 2.91e+01 1fbaA c.1.10.1 29124 1ekrA 161 2.92e+01 1ekrA d.58.21.1 39380 1bby 69 2.93e+01 2bby a.4.5.15 16149 1fdr 248 2.99e+01 1fdr b.43.4.2 25653 c.25.1.1 31543 1q1hA 110 3.01e+01 1jr2A 286 3.03e+01 c.113.1.1 67111 1bmqA 167 3.11e+01 1pauA c.17.1.1 30998 1io2A 213 3.13e+01 1ekeA c.55.3.1 62612 1jkxA 212 3.18e+01 c.65.1.1 66813 1fx2A 235 3.22e+01 1fx2A d.58.29.1 39430 1lqpA 135 3.34e+01 d.32.1.2 78151 1nkiA 135 3.34e+01 1q0bA 367 3.41e+01 1nksA 194 3.43e+01 1nksA c.37.1.1 31886 1p1lA 102 3.54e+01 d.58.5.2 87695 1ka9H 200 3.57e+01 c.23.16.1 77308 1euvB 86 3.62e+01 1a5r d.15.1.1 37598 1gveA 327 3.66e+01 c.1.7.1 70597 1jwiB 125 3.74e+01 d.169.1.1 67384 1hbnB 442 3.81e+01 1mroB a.89.1.1 60900 d.58.31.2 60901 1byi 224 3.83e+01 1byi c.37.1.10 32199 1j9qA 341 3.85e+01 1nif b.6.1.3 62765 b.6.1.3 62766 1auoA 218 3.85e+01 1auoA c.69.1.14 34716 1pfvA 551 3.87e+01 1rypJ 204 3.88e+01 d.153.1.4 41878 1f4lA 551 3.89e+01 1qqtA a.27.1.1 59648 c.26.1.1 59649 g.41.1.1 59650 1nzaA 103 3.93e+01 d.58.5.2 86444 1c4kA 730 3.97e+01 1ordA c.23.1.4 31273 c.67.1.5 34502 d.125.1.1 41123 1mroB 442 3.97e+01 1mroB a.89.1.1 18531 d.58.31.2 39449 1or4A 178 4.00e+01