# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1nfjA	89	3.33e-05			
1nh9A	87	2.41e-04			
1n1jB	97	3.68e-01		a.22.1.3	79814
1pd21	199	2.40e+00	1pd21		
1l0iA	78	2.40e+00		a.28.1.1	77643
1hq3A	129	2.69e+00	1aoiC	a.22.1.1	16434
1nbaA	264	4.42e+00	1nbaA	c.33.1.1	31753
1fs0E	138	4.93e+00	1aqt	a.2.10.1	59997
				b.93.1.1	59998
1kx5C	128	5.13e+00		a.22.1.1	77595
1iyhA	198	5.52e+00		a.45.1.1	83790
				c.47.1.5	83791
1f7uA	607	7.16e+00	1bs2A	a.27.1.1	59673
				c.26.1.1	59674
				d.67.2.1	59675
1g2iA	166	8.39e+00	1g2iA	c.23.16.2	31438
1f66C	128	8.75e+00	1aoiC	a.22.1.1	16442
1bby	69	8.97e+00	2bby	a.4.5.15	16149
1p3dA	475	1.01e+01		c.5.1.1	87728
				c.59.1.1	87729
				c.72.2.1	87730
1vhwA	253	1.13e+01			
1jfyA	311	1.16e+01			
1jr7A	311	1.16e+01		b.82.2.3	63255
1nt2B	258	1.24e+01		a.183.1.1	86150
3lynA	136	1.85e+01	1lis	a.19.1.1	16413
1on2A	142	1.93e+01		a.4.5.24	87103
				a.76.1.1	87104
1l4iA	206	1.99e+01		b.1.11.1	73564
				b.7.2.1	73565
1noyA	388	2.12e+01	1clqA	c.55.3.5	33713
1udvA	89	2.29e+01			
1rtxA	123	2.43e+01			
1qvcA	145	2.50e+01	3ullA	b.40.4.3	25284
1ozjA	144	2.59e+01			
1sluA	142	2.74e+01	1sluA	b.16.1.1	23685
1air	353	2.95e+01	1air	b.80.1.1	28018
1bt0A	76	2.96e+01	1ubi	d.15.1.1	37607
1d3bB	91	3.06e+01	1d3bB	b.38.1.1	24804
1mhdA	132	3.31e+01	1mhdA	d.164.1.1	42175
1jwiB	125	3.43e+01		d.169.1.1	67384
1f80D	81	3.51e+01	1acp	a.28.1.1	59686
1o88A	353	3.51e+01		b.80.1.1	81178
1p6oA	161	3.66e+01			
1gnyA	153	3.70e+01		b.18.1.11	65404
1dmhA	311	3.90e+01	1dmhA	b.3.6.1	22633
1mzbA	136	3.90e+01			
1d8cA	723	3.91e+01	1d8cA	c.1.13.1	29325