;  SAM: /projects/compbio/programs/hmm-server-2.0/bin/i686/prettyalign v3.2.1 (Noverber 14, 2000) compiled 11/17/00_00:59:04
;  (c) 1992-2000 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1999.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
; Sequences correspond to the following labels:
; 1 1hxqA
; 2 1hxpA
; 3 1guqA
              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 MTQFNPVDHPHRRYNPLTGQWILVSPHRAKRPWQGAQETPAKQVLPAHDPDCFLCAGNVRVTGDK
   2 MTQFNPVDHPHRRYNPLTGQWILVSPHRAKRPWEGAQETPAKQVLPAHDPDCFLCAGNVRVTGDK
   3 MTQFNPVDHPHRRYNPLTGQWILVSPHRAKRPWQGAQETPAKQVLPAHDPDCFLCAGNVRVTGDK


         70        80        90       100       110       120       130
         |         |         |         |         |         |         |
   1 NPDYTGTYVFTNDFAALMSDTPDAPESHDPLMRCQSARGTSRVICFSPDHSKTLPELSVAALTEI
   2 NPDYTGTYVFTNDFAALMSDTPDAPESHDPLMRCQSARGTSRVICFSPDHSKTLPELSVAALTEI
   3 NPDYTGTYVFTNDFAALMSDTPDAPESHDPLMRCQSARGTSRVICFSPDHSKTLPELSVAALTEI


             140       150       160       170       180       190     
              |         |         |         |         |         |     
   1 VKTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPHGQIWANSFLPNEAEREDRLQKEYFAEQKS
   2 VKTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPHGQIWANSFLPNEAEREDRLQKEYFAEQKS
   3 VKTWQEQTAELGKTYPWVQVFENKGAAMGCSNPHPGGQIWANSFLPNEAEREDRLQKEYFAEQKS


        200       210       220       230       240       250       260
         |         |         |         |         |         |         |
   1 PMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALK
   2 PMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALK
   3 PMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALK


             270       280       290       300       310       320     
              |         |         |         |         |         |     
   1 KLTSRYDNLFQCSFPYSMGWHGAPFNGEANQHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQRD
   2 KLTSRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQRD
   3 KLTSRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQRD


        330       340        
         |         |        
   1 LTAEQAAERLRAVSDIHFRESGV
   2 LTAEQAAERLRAVSDIHFRESGV
   3 LTAEQAAERLRAVSDIHFRESGV