# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hxpA 348 9.76e-51 1guqA d.13.1.2 37530 d.13.1.2 37531 1gupA 348 2.40e-50 1guqA d.13.1.2 37534 d.13.1.2 37535 1guqA 348 2.64e-50 1guqA d.13.1.2 37522 d.13.1.2 37523 1kpeA 126 7.10e-12 1kpf d.13.1.1 37508 1kpf 126 9.03e-12 1kpf d.13.1.1 37507 1emsA 440 1.54e-11 1emsA d.13.1.1 37520 d.160.1.1 42086 1fit 147 1.46e-10 1fit d.13.1.1 37499 2fhi 147 3.87e-10 1fit d.13.1.1 37505 1st0A 337 2.20e-01 1k30A 368 1.26e+00 c.112.1.1 68067 2cmd 312 1.28e+00 2cmd c.2.1.5 30135 d.162.1.1 42102 1hrkA 359 1.54e+00 1hrkA c.92.1.1 61228 1fg7A 356 1.54e+00 1gewA c.67.1.1 59819 2polA 366 2.08e+00 2polA d.131.1.1 41356 d.131.1.1 41357 d.131.1.1 41358 1ux6A 350 2.19e+00 1hw5A 210 3.61e+00 2cgpA a.4.5.4 16098 b.82.3.2 28137 1iuqA 367 4.04e+00 1b3eA 330 4.25e+00 1nnt c.94.1.2 35897 1g0sA 209 4.90e+00 1g0sA d.113.1.1 60187 1mmiA 366 6.64e+00 1o6zA 303 6.68e+00 c.2.1.5 81107 d.162.1.1 81108 1dtgA 334 6.71e+00 1nnt c.94.1.2 35896 1jyhA 157 7.82e+00 d.60.1.3 71956 1ge9A 184 9.22e+00 1dd5A d.67.3.1 60463 1gwmA 153 9.48e+00 b.18.1.19 83348 1eikA 77 9.85e+00 1eikA d.78.1.1 39751 1a8e 329 1.01e+01 1cb6A c.94.1.2 35888 1culA 217 1.03e+01 1azsA d.58.29.1 39417 1azsA 220 1.03e+01 1azsA d.58.29.1 39416 1ryoA 327 1.04e+01 1cjtA 217 1.06e+01 1azsA d.58.29.1 39419 2cgpA 210 1.08e+01 2cgpA a.4.5.4 16102 b.82.3.2 28141 1nom 248 1.12e+01 1bpyA a.60.12.1 75929 d.218.1.2 75930 1ml4A 308 1.21e+01 c.78.1.1 79255 c.78.1.1 79256 1d3kA 329 1.21e+01 1nnt c.94.1.2 35889 1m41A 380 1.31e+01 c.1.16.4 78595 1jyoA 130 1.31e+01 d.198.1.1 67483 1qmeA 702 1.36e+01 1pmd d.11.1.1 37487 d.11.1.1 37488 d.175.1.1 42560 e.3.1.1 42769 1azsB 212 1.38e+01 1azsA d.58.29.1 39423 1d8cA 723 1.45e+01 1d8cA c.1.13.1 29325 1huuA 90 1.46e+01 1huuA a.55.1.1 17897 1isiA 265 1.62e+01 e.4.1.1 71394 1qcxA 359 1.63e+01 1qcxA b.80.1.2 28028 1jqfA 334 1.63e+01 c.94.1.2 67086 1v39 322 1.64e+01 3mag c.66.1.25 34206 1vp9 322 1.64e+01 3mag c.66.1.25 34210 1jvnA 555 1.70e+01 c.1.2.1 67355 c.23.16.1 67356 1m15A 357 1.77e+01 a.83.1.1 78368 d.128.1.2 78369 1rpl 251 1.77e+01 1bpyA a.60.12.1 75933 d.218.1.2 75934 1bk0 331 1.79e+01 1bk0 b.82.2.1 28118 1odmA 331 1.79e+01 b.82.2.1 86875 1s4nA 348 1.79e+01 1kyqA 274 1.81e+01 c.2.1.11 73281 e.37.1.1 73282 1vpt 348 1.84e+01 3mag c.66.1.25 34207 1bg0 356 1.86e+01 1qh4A a.83.1.1 18476 d.128.1.2 41211 1bpb 248 1.86e+01 1bpyA a.60.12.1 75811 d.218.1.2 75812 1dyr 206 1.87e+01 1aoeA c.71.1.1 34916 1v0wA 506 1.89e+01 1f0iA 504 1.94e+01 1f0iA d.136.1.2 59566 d.136.1.2 59567 1cec 343 1.94e+01 1ceo c.1.8.3 28809 1ukkA 142 1.96e+01 1g61A 228 2.04e+01 1g61A d.126.1.1 41126 1m7sA 484 2.04e+01 e.5.1.1 74574 1ktbA 405 2.12e+01 b.71.1.1 72960 c.1.8.1 72961 1hrnA 337 2.24e+01 1smrA b.50.1.2 26869 3mag 307 2.25e+01 3mag c.66.1.25 34205 2gn5 87 2.30e+01 1gvp b.40.4.7 25386 1ka1A 357 2.35e+01 e.7.1.1 68369 1gnxA 479 2.35e+01 c.1.8.4 76241 1qgxA 357 2.37e+01 1qgxA e.7.1.1 42973 1iqzA 81 2.39e+01 d.58.1.4 66281 1dgzA 37 2.39e+01 1dfeA g.42.1.1 45319 1gewA 356 2.40e+01 1gewA c.67.1.1 60470 1ybvA 283 2.48e+01 1ybvA c.2.1.2 29948 1dfeA 37 2.50e+01 1dfeA g.42.1.1 45318 1ris 101 2.54e+01 1ris d.58.14.1 39314 1is8A 230 2.58e+01 d.96.1.1 66321 1oc7A 364 2.63e+01 c.6.1.1 86794 1m4zA 238 2.65e+01 b.34.12.1 78630 1bvwA 360 2.71e+01 1bvwA c.6.1.1 30668 1i7oA 429 2.82e+01 1i7oA d.177.1.1 61893 d.177.1.1 61894 1nz0A 118 2.83e+01 d.14.1.2 86433 1bo1A 416 2.83e+01 1bo1A d.143.1.2 41591 1oe4A 247 2.87e+01 c.18.1.3 86895 1nqkA 381 2.94e+01 1qstA 160 2.96e+01 1yghA d.108.1.1 40804 1c52 131 2.97e+01 1c52 a.3.1.1 15810 1g0oA 283 3.08e+01 1ybvA c.2.1.2 60181 1bpyA 335 3.09e+01 1bpyA a.60.6.1 17980 a.60.12.1 75819 d.218.1.2 75820 1pn0A 665 3.10e+01 1hueA 90 3.17e+01 1huuA a.55.1.1 17900 1gttA 429 3.17e+01 d.177.1.1 70529 d.177.1.1 70530 1g3gA 164 3.19e+01 1g6gA b.26.1.2 23918 5gcnA 166 3.25e+01 1yghA d.108.1.1 40807 1phk 298 3.37e+01 1cdkA d.144.1.7 41635 1cmiA 85 3.39e+01 1cmiA d.39.1.1 38551 1nn6A 228 3.43e+01 b.47.1.2 85893 1jtvA 327 3.48e+01 c.2.1.2 84230 1i1qA 520 3.49e+01 1qdlA d.161.1.1 61543 1louA 101 3.51e+01 1ris d.58.14.1 39323 1fds 327 3.53e+01 1fds c.2.1.2 29838 1dk4A 252 3.53e+01 1dk4A e.7.1.1 42970 1yuiA 54 3.56e+01 1yuiA g.37.1.1 45073 1od2A 805 3.58e+01 c.14.1.4 86821 c.14.1.4 86822 1hx0A 496 3.63e+01 b.71.1.1 61346 c.1.8.1 61347 1nv8A 284 3.68e+01 c.66.1.30 86224 1ldg 316 3.70e+01 1ceqA c.2.1.5 30165 d.162.1.1 42132 1dekA 241 3.71e+01 1dekA c.37.1.1 31842 1m1lA 236 3.72e+01 2bvwA 362 3.77e+01 1bvwA c.6.1.1 30666 1g6gA 127 3.78e+01 1g6gA b.26.1.2 23916 1ocnA 362 3.82e+01 c.6.1.1 86808 1ceo 343 3.83e+01 1ceo c.1.8.3 28808 1t2dA 322 3.86e+01 1ceqA 316 3.89e+01 1ceqA c.2.1.5 30163 d.162.1.1 42130