# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hxpA 348 4.27e-62 1guqA d.13.1.2 37530 d.13.1.2 37531 1gupA 348 1.72e-61 1guqA d.13.1.2 37534 d.13.1.2 37535 1guqA 348 1.90e-61 1guqA d.13.1.2 37522 d.13.1.2 37523 1emsA 440 4.39e-15 1emsA d.13.1.1 37520 d.160.1.1 42086 1kpeA 126 3.53e-12 1kpf d.13.1.1 37508 1fit 147 4.20e-12 1fit d.13.1.1 37499 1kpf 126 1.11e-11 1kpf d.13.1.1 37507 2fhi 147 1.21e-11 1fit d.13.1.1 37505 1fg7A 356 3.50e-02 1gewA c.67.1.1 59819 1fyhA 258 4.99e-01 1d9cA a.26.1.3 16907 a.26.1.3 16908 1k94A 165 6.44e-01 a.39.1.8 68333 1h4pA 408 8.88e-01 1st0A 337 9.05e-01 1pvc1 301 1.34e+00 1pov1 1omwA 689 1.66e+00 a.91.1.1 87086 b.55.1.1 87087 d.144.1.7 87088 1g65K 211 1.87e+00 d.153.1.4 41907 1rpl 251 2.06e+00 1bpyA a.60.12.1 75933 d.218.1.2 75934 1rypL 212 2.17e+00 d.153.1.4 41880 1gewA 356 2.34e+00 1gewA c.67.1.1 60470 1ml4A 308 2.35e+00 c.78.1.1 79255 c.78.1.1 79256 1ibrB 462 2.57e+00 1qgrA a.118.1.1 19120 1hdmA 201 2.81e+00 1iakA b.1.1.2 21583 d.19.1.1 38157 1nom 248 2.94e+00 1bpyA a.60.12.1 75929 d.218.1.2 75930 1qgrA 876 3.31e+00 1qgrA a.118.1.1 19119 1azsB 212 3.46e+00 1azsA d.58.29.1 39423 1bpb 248 3.93e+00 1bpyA a.60.12.1 75811 d.218.1.2 75812 1g0sA 209 4.51e+00 1g0sA d.113.1.1 60187 1zbdB 134 5.48e+00 1zbdB g.50.1.1 45359 1focA 132 5.51e+00 1c52 a.3.1.1 15812 1bpyA 335 6.12e+00 1bpyA a.60.6.1 17980 a.60.12.1 75819 d.218.1.2 75820 1uvqA 197 7.40e+00 1br1B 150 7.55e+00 1wdcC a.39.1.5 17309 1qnaA 200 7.76e+00 1ytbA d.129.1.1 41226 d.129.1.1 41227 1oihA 301 8.47e+00 1iuqA 367 8.84e+00 1hyeA 313 9.12e+00 2cmd c.2.1.5 61400 d.162.1.1 61401 1vokA 200 9.13e+00 1ytbA d.129.1.1 41242 d.129.1.1 41243 1c52 131 9.14e+00 1c52 a.3.1.1 15810 1cg5A 141 9.79e+00 1abwA a.1.1.2 15406 1ovoA 56 9.93e+00 2ovo g.15.1.1 44697 1o1fC 147 9.98e+00 i.15.1.1 80997 1iakA 199 1.02e+01 1iakA b.1.1.2 21625 d.19.1.1 38199 1hmpA 217 1.16e+01 1qk3A c.61.1.1 34075 1g2qA 187 1.16e+01 c.61.1.1 65117 1gg4A 452 1.21e+01 1gg4A c.98.1.1 58985 c.59.1.1 33957 c.72.2.1 58986 1b54 257 1.22e+01 1ct5A c.1.6.2 28664 1akp 114 1.22e+01 2mcm b.1.7.1 22212 1qk4A 233 1.25e+01 1qk3A c.61.1.1 34037 1sgpI 51 1.27e+01 2ovo g.15.1.1 44678 1k8kG 151 1.31e+01 a.118.13.1 68313 1k3eA 156 1.33e+01 d.198.1.1 68103 1dgqA 188 1.33e+01 1ido c.62.1.1 34131 1qk3A 233 1.50e+01 1qk3A c.61.1.1 34031 1ctqA 166 1.55e+01 1ctqA c.37.1.8 31965 1hizA 379 1.59e+01 c.1.8.3 65841 1bak 119 1.60e+01 1bak b.55.1.1 26973 1lf7A 182 1.66e+01 b.60.1.1 73878 821p 166 1.68e+01 1ctqA c.37.1.8 31969 1ct5A 256 1.75e+01 1ct5A c.1.6.2 28663 1b8pA 329 1.83e+01 1bmdA c.2.1.5 30147 d.162.1.1 42114 1uquA 482 1.86e+01 1f4qA 165 1.89e+01 1alvA a.39.1.8 17360 1o63A 219 1.91e+01 5p21 166 1.93e+01 1ctqA c.37.1.8 31966 1ji8A 111 1.96e+01 d.203.1.1 66733 1gcvA 140 2.00e+01 1cg5B a.1.1.2 15410 1r0rI 51 2.02e+01 1rzhH 260 2.09e+01 1rypB 250 2.12e+01 1rypB d.153.1.4 41933 1mbxC 106 2.19e+01 d.45.1.2 78929 1sqhA 312 2.19e+01 1uqtA 482 2.25e+01 1gw1A 376 2.25e+01 c.1.8.3 76361 1ee8A 266 2.38e+01 1ee8A a.156.1.2 75823 b.113.1.1 75824 g.39.1.8 75825 1gnxA 479 2.40e+01 c.1.8.4 76241 1bzyA 217 2.41e+01 1qk3A c.61.1.1 34071 1oxkB 134 2.48e+01 2ovo 56 2.50e+01 2ovo g.15.1.1 44701 1jopA 155 2.50e+01 b.82.2.7 84187 1pk5A 248 2.55e+01 a.123.1.1 88139 1uzpA 162 2.55e+01 1qovH 260 2.57e+01 6prcH b.41.1.1 25464 f.23.10.1 43457 1fsgA 233 2.57e+01 1qk3A c.61.1.1 34029 3mag 307 2.75e+01 3mag c.66.1.25 34205 1gvp 87 2.79e+01 1gvp b.40.4.7 25369 1jb0C 80 2.82e+01 1jb0C d.58.1.4 62822 1vp9 322 2.86e+01 3mag c.66.1.25 34210 1k0tA 80 2.87e+01 d.58.1.4 71976 1n6bA 473 2.90e+01 a.104.1.1 85359 1ry6A 360 2.95e+01 1jipA 403 3.05e+01 a.104.1.1 66748 1vqb 87 3.18e+01 1gvp b.40.4.7 25370 1h8mA 140 3.34e+01 1h8mA d.110.4.1 60782 1odzA 386 3.37e+01 c.1.8.3 86889 1bn6A 294 3.44e+01 1bn6A c.69.1.8 34678 1i50I 122 3.49e+01 g.41.3.1 61762 g.41.3.1 61763 1bn7A 294 3.63e+01 1bn6A c.69.1.8 34677 1ylvA 342 3.69e+01 1b4kA c.1.10.3 29180 1mzhA 225 3.73e+01 c.1.10.1 79698 1br2A 791 3.76e+01 1lvk b.34.3.1 24558 c.37.1.9 32155 1kafA 108 3.82e+01 d.199.1.1 68372 1uahA 431 3.84e+01 1cqwA 295 3.87e+01 1b6g c.69.1.8 34679 1k30A 368 3.88e+01 c.112.1.1 68067 1ug6A 431 3.89e+01 c.1.8.4 88490