# List of top-scoring protein chains for T0204.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hxqA 348 2.59e-45 1guqA d.13.1.2 37542 d.13.1.2 37543 1hxqB 348 2.75e-45 1guqA d.13.1.2 37544 d.13.1.2 37545 1hxpA 348 3.51e-45 1guqA d.13.1.2 37530 d.13.1.2 37531 1guqA 348 9.88e-45 1guqA d.13.1.2 37522 d.13.1.2 37523 1kpf 126 4.62e-17 1kpf d.13.1.1 37507 1rzyA 126 5.08e-17 4rhn 115 8.70e-17 1kpf d.13.1.1 37495 1emsA 440 8.79e-17 1emsA d.13.1.1 37520 d.160.1.1 42086 1fit 147 2.03e-14 1fit d.13.1.1 37499 2fhi 147 9.11e-14 1fit d.13.1.1 37505 1st0A 337 2.32e-03 1lw3A 657 2.96e+00 1vecA 206 3.06e+00 1nepA 130 5.68e+00 b.1.18.7 80440 1a3aA 148 5.75e+00 1a3aA d.112.1.1 40917 1k94A 165 5.77e+00 a.39.1.8 68333 1f4qA 165 5.78e+00 1alvA a.39.1.8 17360 1hzjA 348 6.35e+00 1xel c.2.1.2 61450 1i3kA 348 6.39e+00 1xel c.2.1.2 61595 1ek6A 348 6.54e+00 1xel c.2.1.2 29800 1h4pA 408 9.39e+00 1a9y 338 9.96e+00 1xel c.2.1.2 29789 1yuiA 54 1.01e+01 1yuiA g.37.1.1 45073 1kvu 338 1.11e+01 1xel c.2.1.2 29794 1kvr 338 1.14e+01 1xel c.2.1.2 29793 1udc 338 1.26e+01 1xel c.2.1.2 29785 1mejA 223 1.34e+01 c.65.1.1 79029 1kvt 338 1.40e+01 1xel c.2.1.2 29798 1i7pA 274 1.43e+01 b.43.4.2 66048 c.25.1.1 66049 1a9z 338 1.46e+01 1xel c.2.1.2 29795 1nrjA 158 1.51e+01 d.110.4.4 86124 1meoA 209 1.56e+01 c.65.1.1 79035 1kvq 338 1.66e+01 1xel c.2.1.2 29797 1ndh 272 1.74e+01 1ndh b.43.4.2 25662 c.25.1.1 31552 1lf0A 166 1.75e+01 c.37.1.8 77913 1kvs 338 1.76e+01 1xel c.2.1.2 29799 1nvvQ 166 1.76e+01 c.37.1.8 86277 521p 166 1.78e+01 1ctqA c.37.1.8 31992 1dfeA 37 1.79e+01 1dfeA g.42.1.1 45318 1j3qA 190 1.86e+01 1udb 338 1.88e+01 1xel c.2.1.2 29787 221p 166 1.94e+01 1ctqA c.37.1.8 31987 2ctc 307 1.97e+01 1aye c.56.5.1 33802 1agp 166 2.02e+01 1ctqA c.37.1.8 31985 1hl9A 449 2.02e+01 821p 166 2.04e+01 1ctqA c.37.1.8 31969 1pytB 309 2.05e+01 1aye c.56.5.1 33820 1rvdA 166 2.06e+01 1ctqA c.37.1.8 31974 2q21 171 2.07e+01 1ctqA c.37.1.8 31986 1lrkA 338 2.07e+01 c.2.1.2 74225 1j1uA 306 2.08e+01 c.26.1.1 83980 1jah 166 2.10e+01 1ctqA c.37.1.8 31972 1ctqA 166 2.12e+01 1ctqA c.37.1.8 31965 421p 166 2.13e+01 1ctqA c.37.1.8 31983 6q21A 171 2.13e+01 1ctqA c.37.1.8 31979 1a6dA 545 2.28e+01 1a6dA a.129.1.2 19488 c.8.5.2 30819 d.56.1.2 38936 1vixA 420 2.36e+01 4q21 189 2.43e+01 1ctqA c.37.1.8 31978 1m4lA 307 2.46e+01 c.56.5.1 78604 1yme 309 2.47e+01 1aye c.56.5.1 33804 721p 166 2.55e+01 1ctqA c.37.1.8 31975 1iuqA 367 2.55e+01 1k30A 368 2.55e+01 c.112.1.1 68067 1fg7A 356 2.70e+01 1gewA c.67.1.1 59819 1elrA 131 2.74e+01 1a17 a.118.8.1 19209 1n26A 325 2.81e+01 b.1.1.4 79850 b.1.2.1 79851 b.1.2.1 79852 1lfdB 167 2.84e+01 1ctqA c.37.1.8 31976 2dpmA 284 2.87e+01 2dpmA c.66.1.28 34246 621p 166 2.90e+01 1ctqA c.37.1.8 31988 1ckeA 227 3.04e+01 1ckeA c.37.1.1 31846 1o5kA 305 3.06e+01 1q7sA 117 3.13e+01 1iaqA 166 3.30e+01 1ctqA c.37.1.8 62120 1kdoA 227 3.38e+01 c.37.1.1 68478 1ew6A 137 3.50e+01 1ewaA a.1.1.2 15637 1vhmA 195 3.54e+01 1sur 215 3.58e+01 1sur c.26.2.2 31620 1ftrA 296 3.60e+01 1ftrA d.58.33.1 39485 d.58.33.1 39486 1l6sA 323 3.60e+01 c.1.10.3 73627 1iurA 88 3.61e+01 1ci3M 249 3.67e+01 1hcz b.2.6.1 22480 b.84.2.2 28266 3ezaA 249 3.70e+01 1zymA a.60.10.1 18112 c.8.1.2 30707 1ex0A 730 3.77e+01 1zymA 258 3.77e+01 1zymA a.60.10.1 18110 c.8.1.2 30705 1eza 259 3.78e+01 1zymA a.60.10.1 18113 c.8.1.2 30708 1hf2A 210 3.85e+01 1hf2A b.80.3.1 60992 c.102.1.1 60993 1m0uA 249 3.88e+01 a.45.1.1 78359 c.47.1.5 78360 1cbx 307 3.91e+01 1aye c.56.5.1 33813 5cpa 307 3.97e+01 1aye c.56.5.1 33811