# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1guqA 348 1.19e-69 1guqA d.13.1.2 37522 d.13.1.2 37523 1kpf 126 2.57e-23 1kpf d.13.1.1 37507 1kpeA 126 3.07e-23 1kpf d.13.1.1 37508 1fit 147 5.48e-21 1fit d.13.1.1 37499 2fhi 147 4.99e-20 1fit d.13.1.1 37505 1st0A 337 3.69e-06 1k30A 368 7.44e-02 c.112.1.1 68067 1jvnA 555 8.95e-02 c.1.2.1 67355 c.23.16.1 67356 1azsA 220 1.37e-01 1azsA d.58.29.1 39416 1lldA 319 2.15e-01 3ldh c.2.1.5 30177 d.162.1.1 42144 1iuqA 367 2.64e-01 2cmd 312 3.11e-01 2cmd c.2.1.5 30135 d.162.1.1 42102 1azsB 212 5.07e-01 1azsA d.58.29.1 39423 1v0wA 506 6.02e-01 1ng4A 390 6.02e-01 c.3.1.2 85666 d.16.1.3 85667 1f0iA 504 6.73e-01 1f0iA d.136.1.2 59566 d.136.1.2 59567 1hw5A 210 1.19e+00 2cgpA a.4.5.4 16098 b.82.3.2 28137 1a9xA 1058 1.80e+00 a.92.1.1 18550 c.24.1.1 31479 c.30.1.1 31657 c.30.1.1 31658 d.142.1.2 41502 d.142.1.2 41503 2polA 366 1.95e+00 2polA d.131.1.1 41356 d.131.1.1 41357 d.131.1.1 41358 1gwmA 153 2.24e+00 b.18.1.19 83348 1ndh 272 2.61e+00 1ndh b.43.4.2 25662 c.25.1.1 31552 1b5qA 472 2.74e+00 1b37B c.3.1.2 30404 d.16.1.5 37968 1oihA 301 2.81e+00 1gnxA 479 2.86e+00 c.1.8.4 76241 1g0oA 283 2.90e+00 1ybvA c.2.1.2 60181 1ab8A 220 3.66e+00 1azsA d.58.29.1 39414 1qcxA 359 3.89e+00 1qcxA b.80.1.2 28028 1phk 298 3.94e+00 1cdkA d.144.1.7 41635 1uyrA 737 4.41e+00 1lw3A 657 4.66e+00 1gal 583 4.70e+00 1gpeA c.3.1.2 30386 d.16.1.1 37950 1rypL 212 4.72e+00 d.153.1.4 41880 1mmiA 366 4.78e+00 1qh4A 380 4.82e+00 1qh4A a.83.1.1 18462 d.128.1.2 41197 1pj5A 830 4.92e+00 1ptmA 329 6.49e+00 1i7pA 274 6.51e+00 b.43.4.2 66048 c.25.1.1 66049 1j1uA 306 6.92e+00 c.26.1.1 83980 1jyhA 157 7.02e+00 d.60.1.3 71956 1olzA 663 7.64e+00 1jenA 267 8.09e+00 1jenA 1jvbA 347 8.14e+00 b.35.1.2 77181 c.2.1.1 77182 1itvA 195 8.29e+00 b.66.1.1 76791 1sqhA 312 8.57e+00 1hl9A 449 8.59e+00 1rypH 205 9.17e+00 d.153.1.4 41876 1hrkA 359 9.34e+00 1hrkA c.92.1.1 61228 1j9lA 247 9.38e+00 c.106.1.1 62762 1d8cA 723 9.84e+00 1d8cA c.1.13.1 29325 1qtnA 164 9.94e+00 1pauA c.17.1.1 30999 1udxA 416 1.02e+01 1korA 400 1.07e+01 c.26.2.1 72824 d.210.1.1 72825 1px5A 349 1.13e+01 1k0eA 453 1.14e+01 d.161.1.1 67938 1qmeA 702 1.28e+01 1pmd d.11.1.1 37487 d.11.1.1 37488 d.175.1.1 42560 e.3.1.1 42769 1rp4A 389 1.31e+01 2ctc 307 1.34e+01 1aye c.56.5.1 33802 1nstA 325 1.35e+01 1nstA c.37.1.5 31951 1nepA 130 1.36e+01 b.1.18.7 80440 1huuA 90 1.36e+01 1huuA a.55.1.1 17897 1opoA 348 1.38e+01 b.121.4.7 87240 1h3nA 878 1.38e+01 a.27.1.1 76641 b.51.1.1 76642 c.26.1.1 76643 1hrnA 337 1.40e+01 1smrA b.50.1.2 26869 1ux6A 350 1.43e+01 1g71A 347 1.44e+01 1g71A e.16.1.1 43268 1ukkA 142 1.51e+01 1ci3M 249 1.57e+01 1hcz b.2.6.1 22480 b.84.2.2 28266 1nmmB 286 1.60e+01 c.68.1.2 80662 1pztA 286 1.60e+01 1vk6A 269 1.73e+01 1hn0A 1021 1.93e+01 a.102.3.2 83616 b.18.1.17 83617 b.24.1.1 83618 b.30.5.2 83619 1dekA 241 1.96e+01 1dekA c.37.1.1 31842 1dfeA 37 2.00e+01 1dfeA g.42.1.1 45318 1pwxA 254 2.01e+01 1dyr 206 2.04e+01 1aoeA c.71.1.1 34916 1ul7A 102 2.15e+01 3csuA 310 2.16e+01 3csuA c.78.1.1 35094 c.78.1.1 35095 1udc 338 2.24e+01 1xel c.2.1.2 29785 1gpeA 587 2.25e+01 1gpeA c.3.1.2 30387 d.16.1.1 37951 1gzgA 337 2.27e+01 c.1.10.3 70805 1f2tB 148 2.29e+01 1f2tB 1kkhA 317 2.30e+01 d.14.1.5 72645 d.58.26.3 72646 1o6zA 303 2.33e+01 c.2.1.5 81107 d.162.1.1 81108 1b4kA 337 2.38e+01 1b4kA c.1.10.3 29184 1k3eA 156 2.45e+01 d.198.1.1 68103 1p7tA 731 2.45e+01 1nukA 183 2.51e+01 1nukA b.18.1.4 23721 1hj8A 222 2.52e+01 b.47.1.2 65844 1gheA 177 2.53e+01 d.108.1.1 76222 1smd 496 2.54e+01 1smd b.71.1.1 27768 c.1.8.1 28755 1jq5A 370 2.63e+01 e.22.1.2 67084 1m7jA 484 2.67e+01 b.92.1.6 78732 b.92.1.6 78733 c.1.9.11 78734 1gowA 489 2.67e+01 1qvbA c.1.8.4 28981 1at3A 247 2.68e+01 1at3A b.57.1.1 27021 2tbs 222 2.70e+01 5ptp b.47.1.2 26009 1rk6A 496 2.73e+01 1hyhA 309 2.77e+01 1hyhA c.2.1.5 30150 d.162.1.1 42117 1xel 338 2.78e+01 1xel c.2.1.2 29786 1lfaA 187 2.80e+01 1ido c.62.1.1 34122 1i9gA 280 2.81e+01 c.66.1.13 62090 1ockA 412 2.82e+01 c.117.1.1 86802 1cseI 71 2.83e+01 1egpA d.40.1.1 38559 1f83A 425 2.85e+01 1f82A d.92.1.7 40306 1dfcA 493 2.86e+01 1dfcA b.42.5.1 25616 b.42.5.1 25617 b.42.5.1 25618 b.42.5.1 25619 1r8nA 185 2.87e+01 1sixA 174 2.97e+01 1rzjG 321 3.07e+01 1buoA 121 3.09e+01 1buoA d.42.1.1 38631 1o8rA 94 3.17e+01 d.234.1.1 86677 1t2dA 322 3.27e+01 1qz9A 416 3.28e+01 1b35C 282 3.28e+01 1b35C 1k8kD 300 3.31e+01 d.198.2.1 68309 d.198.2.1 68310 1v2bA 177 3.36e+01 1gy8A 397 3.40e+01 c.2.1.2 83376 1duvG 333 3.45e+01 1othA c.78.1.1 35228 c.78.1.1 35229 1pinA 163 3.45e+01 1pinA b.72.1.1 27802 d.26.1.1 38431 1g6uA 48 3.46e+01 1g6uA k.9.1.1 46425 1byfA 125 3.49e+01 1byfA d.169.1.1 42419 1yuiA 54 3.51e+01 1yuiA g.37.1.1 45073 1r94A 118 3.56e+01 1ovlA 271 3.61e+01 a.123.1.1 87455 1avwB 171 3.68e+01 1wba b.42.4.1 25599 1fgxA 288 3.72e+01 1fgxA c.68.1.2 34508 1ten 90 3.73e+01 1ten b.1.2.1 21990 1tiiD 99 3.76e+01 1tiiD b.40.2.1 24965 1eg7A 557 3.76e+01 1eg7A c.37.1.10 32241 1a7j 290 3.80e+01 1a7j c.37.1.6 31952 1qe3A 489 3.83e+01 2bce c.69.1.1 34630 1ml4A 308 3.86e+01 c.78.1.1 79255 c.78.1.1 79256 1v33A 366 3.87e+01 1m4lA 307 3.92e+01 c.56.5.1 78604 1mbxC 106 3.94e+01 d.45.1.2 78929 1cd8 114 3.95e+01 1cd8 b.1.1.1 19714