# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1guqA 348 1.11e-63 1guqA d.13.1.2 37522 d.13.1.2 37523 1kpeA 126 2.57e-22 1kpf d.13.1.1 37508 1kpf 126 4.04e-22 1kpf d.13.1.1 37507 1fit 147 7.72e-22 1fit d.13.1.1 37499 2fhi 147 6.60e-21 1fit d.13.1.1 37505 1st0A 337 6.97e-06 1iuqA 367 2.14e-02 1k30A 368 7.81e-02 c.112.1.1 68067 1ptmA 329 9.84e-02 1azsA 220 1.49e-01 1azsA d.58.29.1 39416 1uyrA 737 1.66e-01 1hyeA 313 1.98e-01 2cmd c.2.1.5 61400 d.162.1.1 61401 2cmd 312 2.79e-01 2cmd c.2.1.5 30135 d.162.1.1 42102 1lldA 319 2.83e-01 3ldh c.2.1.5 30177 d.162.1.1 42144 1rypL 212 3.48e-01 d.153.1.4 41880 4pfk 319 3.85e-01 3pfk c.89.1.1 35582 1qz9A 416 4.92e-01 1oihA 301 4.99e-01 1phk 298 5.75e-01 1cdkA d.144.1.7 41635 1g0oA 283 7.24e-01 1ybvA c.2.1.2 60181 1a9xA 1058 7.94e-01 a.92.1.1 18550 c.24.1.1 31479 c.30.1.1 31657 c.30.1.1 31658 d.142.1.2 41502 d.142.1.2 41503 1jvnA 555 8.45e-01 c.1.2.1 67355 c.23.16.1 67356 1gwmA 153 8.91e-01 b.18.1.19 83348 1qh4A 380 9.10e-01 1qh4A a.83.1.1 18462 d.128.1.2 41197 1gal 583 1.08e+00 1gpeA c.3.1.2 30386 d.16.1.1 37950 1hrkA 359 1.17e+00 1hrkA c.92.1.1 61228 1ng4A 390 1.30e+00 c.3.1.2 85666 d.16.1.3 85667 1nmmB 286 1.39e+00 c.68.1.2 80662 1pztA 286 1.52e+00 1j8yF 297 1.71e+00 1ng1 a.24.13.1 62747 c.37.1.10 62748 1fsgA 233 1.99e+00 1qk3A c.61.1.1 34029 1azsB 212 1.99e+00 1azsA d.58.29.1 39423 1j8mF 297 2.01e+00 1ng1 a.24.13.1 62742 c.37.1.10 62743 1qmeA 702 2.14e+00 1pmd d.11.1.1 37487 d.11.1.1 37488 d.175.1.1 42560 e.3.1.1 42769 1hj8A 222 2.17e+00 b.47.1.2 65844 1ul7A 102 2.21e+00 1nstA 325 2.50e+00 1nstA c.37.1.5 31951 2tbs 222 2.63e+00 5ptp b.47.1.2 26009 1g71A 347 2.63e+00 1g71A e.16.1.1 43268 1rypH 205 2.69e+00 d.153.1.4 41876 1fgxA 288 2.72e+00 1fgxA c.68.1.2 34508 3csuA 310 2.72e+00 3csuA c.78.1.1 35094 c.78.1.1 35095 1korA 400 2.75e+00 c.26.2.1 72824 d.210.1.1 72825 1ldg 316 2.88e+00 1ceqA c.2.1.5 30165 d.162.1.1 42132 1j9lA 247 2.94e+00 c.106.1.1 62762 1ndh 272 2.94e+00 1ndh b.43.4.2 25662 c.25.1.1 31552 1s4nA 348 3.04e+00 1duvG 333 3.53e+00 1othA c.78.1.1 35228 c.78.1.1 35229 1pwxA 254 4.19e+00 1px5A 349 4.26e+00 1ten 90 4.40e+00 1ten b.1.2.1 21990 1o6zA 303 4.43e+00 c.2.1.5 81107 d.162.1.1 81108 1ml4A 308 4.54e+00 c.78.1.1 79255 c.78.1.1 79256 1oe4A 247 4.94e+00 c.18.1.3 86895 1rj9A 304 5.17e+00 1t2dA 322 5.39e+00 1a0cA 438 5.77e+00 1a0cA c.1.15.3 29529 1fds 327 6.01e+00 1fds c.2.1.2 29838 1jtvA 327 6.13e+00 c.2.1.2 84230 1iz0A 302 6.17e+00 b.35.1.2 83821 c.2.1.1 83822 1vh5A 148 6.24e+00 1q0sA 259 6.38e+00 1f83A 425 6.42e+00 1f82A d.92.1.7 40306 1jyhA 157 6.56e+00 d.60.1.3 71956 1eg7A 557 6.57e+00 1eg7A c.37.1.10 32241 1uvqA 197 6.75e+00 1gpeA 587 6.77e+00 1gpeA c.3.1.2 30387 d.16.1.1 37951 1hyhA 309 7.06e+00 1hyhA c.2.1.5 30150 d.162.1.1 42117 1vhmA 195 7.10e+00 1g61A 228 7.11e+00 1g61A d.126.1.1 41126 1v33A 366 7.59e+00 1qtnA 164 7.74e+00 1pauA c.17.1.1 30999 1pvvA 315 7.81e+00 1ockA 412 8.04e+00 c.117.1.1 86802 1f0iA 504 8.10e+00 1f0iA d.136.1.2 59566 d.136.1.2 59567 2polA 366 8.12e+00 2polA d.131.1.1 41356 d.131.1.1 41357 d.131.1.1 41358 1q2yA 140 8.16e+00 1v0wA 506 8.19e+00 1i7pA 274 8.45e+00 b.43.4.2 66048 c.25.1.1 66049 1opoA 348 8.45e+00 b.121.4.7 87240 1ci3M 249 8.78e+00 1hcz b.2.6.1 22480 b.84.2.2 28266 1f39A 101 8.97e+00 1umuA b.87.1.1 28386 1i45A 248 9.00e+00 1amk c.1.1.1 61665 1nnwA 252 9.21e+00 d.159.1.5 80674 1pinA 163 9.41e+00 1pinA b.72.1.1 27802 d.26.1.1 38431 1j0hA 588 9.59e+00 b.1.18.2 77027 b.71.1.1 77028 c.1.8.1 77029 1nz0A 118 9.75e+00 d.14.1.2 86433 1m7jA 484 9.76e+00 b.92.1.6 78732 b.92.1.6 78733 c.1.9.11 78734 1dyr 206 9.80e+00 1aoeA c.71.1.1 34916 1oi2A 366 9.92e+00 c.32.1.2 87039 d.79.2.2 87040 1ab8A 220 9.99e+00 1azsA d.58.29.1 39414 1j1uA 306 1.01e+01 c.26.1.1 83980 1i52A 236 1.01e+01 1i52A c.68.1.13 61767 1xxaA 78 1.01e+01 1xxaA d.74.2.1 39700 1byfA 125 1.04e+01 1byfA d.169.1.1 42419 1rk6A 496 1.06e+01 1sqhA 312 1.09e+01 1r7aA 504 1.14e+01 1a8vA 121 1.15e+01 1a62 a.140.3.1 64712 b.40.4.5 64713 1itvA 195 1.16e+01 b.66.1.1 76791 1lqtA 456 1.21e+01 c.3.1.1 74198 c.4.1.1 74199 1rp4A 389 1.25e+01 1ovlA 271 1.27e+01 a.123.1.1 87455 1i9gA 280 1.34e+01 c.66.1.13 62090 1dfcA 493 1.36e+01 1dfcA b.42.5.1 25616 b.42.5.1 25617 b.42.5.1 25618 b.42.5.1 25619 1us5A 314 1.36e+01 1gz6A 319 1.37e+01 c.2.1.2 76410 1rreA 200 1.37e+01 1bg0 356 1.38e+01 1qh4A a.83.1.1 18476 d.128.1.2 41211 1o8bA 219 1.42e+01 c.35.1.2 81180 d.58.40.1 81181 1f42A 306 1.43e+01 1f42A b.1.1.4 59636 b.1.2.1 59637 b.1.2.1 59638 1kutA 230 1.44e+01 d.143.1.1 73017 1a7j 290 1.54e+01 1a7j c.37.1.6 31952 1oi7A 288 1.55e+01 c.2.1.8 87049 c.23.4.1 87050 1uebA 184 1.58e+01 1mkaA 171 1.60e+01 1mkaA d.38.1.2 38543 1othA 321 1.63e+01 1othA c.78.1.1 35260 c.78.1.1 35261 1o5iA 249 1.65e+01 1dekA 241 1.66e+01 1dekA c.37.1.1 31842 1dc1A 323 1.69e+01 1dc1A c.52.1.11 33321 1avpA 204 1.70e+01 1avpA d.3.1.7 37132 1ukkA 142 1.73e+01 1k3eA 156 1.75e+01 d.198.1.1 68103 1i76A 163 1.76e+01 1hfc d.92.1.11 61877 1lyxA 248 1.76e+01 c.1.1.1 78304 1jj2B 337 1.77e+01 1ffkB b.43.3.2 63086 1vhnA 318 1.77e+01 1lghA 56 1.79e+01 1lghA f.3.1.1 43733 1nepA 130 1.79e+01 b.1.18.7 80440 1rewC 135 1.81e+01 1nlnA 204 1.82e+01 1r94A 118 1.85e+01 1cmiA 85 1.86e+01 1cmiA d.39.1.1 38551 1aonO 97 1.89e+01 b.35.1.1 24642 1m15A 357 1.89e+01 a.83.1.1 78368 d.128.1.2 78369 1udxA 416 1.94e+01 1om1A 332 1.99e+01 1m2rA 327 2.00e+01 d.144.1.7 84760 1o5oA 221 2.00e+01 1mh1 186 2.01e+01 1eesA c.37.1.8 32002 1mugA 168 2.01e+01 1mugA c.18.1.2 31030 1jenB 67 2.03e+01 1jenB d.156.1.1 42029 1fxqA 267 2.06e+01 1d9eA c.1.10.4 60108 1o5xA 248 2.08e+01 1smd 496 2.11e+01 1smd b.71.1.1 27768 c.1.8.1 28755 1iznB 277 2.13e+01 e.43.1.2 83848 1r4yA 136 2.13e+01 1e58A 249 2.14e+01 1qhfA c.60.1.1 59262 1dfeA 37 2.20e+01 1dfeA g.42.1.1 45318 1avwB 171 2.21e+01 1wba b.42.4.1 25599 1gvnA 90 2.21e+01 a.8.2.1 76353 1elqA 390 2.22e+01 1elqA c.67.1.3 34436 1g8kA 825 2.22e+01 1g8jA b.52.2.2 26920 c.81.1.1 35328 1ef8A 261 2.23e+01 1ef8A c.14.1.3 30921 1h3fA 432 2.27e+01 c.26.1.1 76631 d.66.1.4 76632 1p3wA 404 2.27e+01 c.67.1.3 87752 1f2tB 148 2.28e+01 1f2tB 1dozA 309 2.30e+01 1ak1 c.92.1.1 35592 1fwsA 267 2.31e+01 1d9eA c.1.10.4 60063 1ofuX 119 2.33e+01 c.37.1.22 86976 1a6o 332 2.34e+01 1a6o 1t82A 155 2.34e+01 1eluA 390 2.36e+01 1elqA c.67.1.3 34434 1jcxA 267 2.37e+01 c.1.10.4 66510 1xel 338 2.40e+01 1xel c.2.1.2 29786 1ee8A 266 2.42e+01 1ee8A a.156.1.2 75823 b.113.1.1 75824 g.39.1.8 75825 1kexA 155 2.55e+01 b.18.1.2 77350 1q7bA 244 2.58e+01 1g60A 260 2.61e+01 c.66.1.11 70151 1gnxA 479 2.61e+01 c.1.8.4 76241 1e29A 135 2.67e+01 1e29A a.3.1.1 59161 1uolA 219 2.68e+01 1jmxB 349 2.69e+01 b.69.2.2 66906 2prd 174 2.74e+01 2prd b.40.5.1 25435 1f0lA 535 2.79e+01 1ddt b.2.1.1 22377 d.166.1.1 42239 f.1.2.1 43382 1g6uA 48 2.80e+01 1g6uA k.9.1.1 46425 1fkx 349 2.84e+01 1a4mA c.1.9.1 29018 1l8bA 190 2.95e+01 d.86.1.1 73683 1t9kA 347 3.02e+01 1mmiA 366 3.04e+01 1ci9A 392 3.05e+01 e.3.1.1 64767 1o60A 292 3.05e+01 1udc 338 3.11e+01 1xel c.2.1.2 29785 1g0sA 209 3.11e+01 1g0sA d.113.1.1 60187 1bob 320 3.13e+01 1bob d.108.1.1 40816 1pe1A 267 3.18e+01 1b35C 282 3.23e+01 1b35C 1ny1A 240 3.23e+01 c.6.2.3 86395 1on3A 523 3.24e+01 c.14.1.4 87107 c.14.1.4 87108 1otjA 283 3.24e+01 1k7kA 221 3.33e+01 c.51.4.1 72104 1squA 155 3.34e+01 1k3xA 262 3.38e+01 a.156.1.2 77242 b.113.1.1 77243 g.39.1.8 77244 1neyA 247 3.38e+01 c.1.1.1 80449 1h0hA 977 3.50e+01 b.52.2.2 76435 c.81.1.1 76436 1hh2P 344 3.50e+01 b.40.4.5 65835 d.52.3.1 65836 d.52.3.1 65837 d.202.1.1 65838 1k0eA 453 3.53e+01 d.161.1.1 67938 1a62 130 3.53e+01 1a62 a.140.3.1 64708 b.40.4.5 64709 1gttA 429 3.54e+01 d.177.1.1 70529 d.177.1.1 70530 1pmmA 466 3.57e+01 1qd1A 325 3.66e+01 1qd1A d.58.34.1 39493 d.58.34.1 39494 1qhfA 240 3.72e+01 1qhfA c.60.1.1 33960 1hrnA 337 3.73e+01 1smrA b.50.1.2 26869 1o8uA 257 3.76e+01 c.14.1.3 81194 1lxnA 99 3.81e+01 d.58.48.1 84737 1e9lA 377 3.81e+01 1e9lA c.1.8.5 59395 d.26.3.1 59396 1jmsA 381 3.82e+01 a.60.6.1 66889 a.60.12.1 75862 d.218.1.2 75863 1mldA 314 3.86e+01 2cmd c.2.1.5 30122 d.162.1.1 42089 1jffA 451 3.87e+01 c.32.1.1 62932 d.79.2.1 62933 1hw5A 210 3.88e+01 2cgpA a.4.5.4 16098 b.82.3.2 28137 1psdA 409 3.90e+01 1psdA c.2.1.4 30097 c.23.12.1 31357 d.58.18.1 39354 1h7wA 1025 3.92e+01 1h7wA a.1.2.2 15683 c.1.4.1 28628 c.3.1.1 30324 c.4.1.1 30609 d.58.1.5 39007 7taa 478 3.92e+01 7taa b.71.1.1 27778 c.1.8.1 28765 1du3A 130 3.97e+01 1d4vA g.24.1.1 44927 g.24.1.1 44928 g.24.1.1 44929 1e3mA 800 3.98e+01 1ewqA a.113.1.1 19075 c.37.1.12 32389 c.55.6.1 33746 d.75.2.1 39747