# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1guqA 348 4.84e-58 1guqA d.13.1.2 37522 d.13.1.2 37523 1kpeA 126 4.16e-19 1kpf d.13.1.1 37508 1kpf 126 1.42e-18 1kpf d.13.1.1 37507 1fit 147 1.23e-17 1fit d.13.1.1 37499 2fhi 147 5.17e-17 1fit d.13.1.1 37505 1st0A 337 2.89e-05 1fsgA 233 1.09e+00 1qk3A c.61.1.1 34029 1k94A 165 1.58e+00 a.39.1.8 68333 1ass 159 3.02e+00 1a6dA c.8.5.2 30818 1yuiA 54 3.22e+00 1yuiA g.37.1.1 45073 1rypL 212 3.39e+00 d.153.1.4 41880 1uqtA 482 4.27e+00 1sur 215 4.49e+00 1sur c.26.2.2 31620 1lldA 319 4.67e+00 3ldh c.2.1.5 30177 d.162.1.1 42144 1ux6A 350 5.61e+00 1azsB 212 6.16e+00 1azsA d.58.29.1 39423 1k82A 268 6.20e+00 a.156.1.2 75866 b.113.1.1 75867 g.39.1.8 75868 1g2qA 187 7.36e+00 c.61.1.1 65117 1q67A 231 7.70e+00 1xyzA 347 8.08e+00 1taxA c.1.8.3 28804 1lw3A 657 9.25e+00 1hyeA 313 9.52e+00 2cmd c.2.1.5 61400 d.162.1.1 61401 1hl9A 449 1.16e+01 1qh4A 380 1.24e+01 1qh4A a.83.1.1 18462 d.128.1.2 41197 1o5xA 248 1.31e+01 1gzwA 134 1.33e+01 1ptmA 329 1.46e+01 1bcpD 110 1.54e+01 1bcpD b.40.2.1 25132 1vhmA 195 1.55e+01 1ceo 343 1.56e+01 1ceo c.1.8.3 28808 1ji8A 111 1.59e+01 d.203.1.1 66733 1ig3A 263 1.61e+01 1ig3A b.82.6.1 62358 c.100.1.1 62359 1cjbA 231 1.62e+01 1qk3A c.61.1.1 34079 1j1uA 306 1.81e+01 c.26.1.1 83980 1ee8A 266 1.84e+01 1ee8A a.156.1.2 75823 b.113.1.1 75824 g.39.1.8 75825 1cv2A 296 1.86e+01 1bn6A c.69.1.8 34680 1zymA 258 1.92e+01 1zymA a.60.10.1 18110 c.8.1.2 30705 1no7A 604 1.96e+01 1mj5A 302 2.22e+01 1j9lA 247 2.30e+01 c.106.1.1 62762 1p3jA 217 2.34e+01 2nacA 393 2.37e+01 2nadA c.2.1.4 30088 c.23.12.1 31348 1a7j 290 2.48e+01 1a7j c.37.1.6 31952 1oroA 213 2.54e+01 1opr c.61.1.1 34093 1gzgA 337 2.61e+01 c.1.10.3 70805 1oihA 301 2.66e+01 1iuqA 367 2.66e+01 1m4lA 307 2.81e+01 c.56.5.1 78604 1kkhA 317 2.94e+01 d.14.1.5 72645 d.58.26.3 72646 1sltA 134 3.04e+01 1c1lA b.29.1.3 24186 1xvaA 292 3.07e+01 1xvaA c.66.1.5 34183 1q52A 314 3.09e+01 1lh0A 213 3.15e+01 c.61.1.1 73896 1ry6A 360 3.16e+01 1uu1A 335 3.18e+01 1aly 146 3.18e+01 1aly b.22.1.1 23856 1azsA 220 3.24e+01 1azsA d.58.29.1 39416 1h4pA 408 3.25e+01 1v6fA 151 3.25e+01 1b4kA 337 3.28e+01 1b4kA c.1.10.3 29184 1g0sA 209 3.54e+01 1g0sA d.113.1.1 60187 1ej0A 180 3.62e+01 1ej0A c.66.1.2 34179 1pe1A 267 3.66e+01 1jcxA 267 3.67e+01 c.1.10.4 66510 1fwsA 267 3.76e+01 1d9eA c.1.10.4 60063 2ctc 307 3.86e+01 1aye c.56.5.1 33802