;  SAM: prettyalign v3.5 (May 1, 2004) compiled 05/13/04_16:24:56
;  (c) 1992-2001 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T2K, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, et al., What is the value added by human intervention in protein
;  structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
              10        20        30        40        50        60    
               |         |         |         |         |         |    
T0204 STSPSHASDRGGGDGDSVENQSPELRKDPVTNRWVIFSPARAKRPTDFKSKSPQNPNPKPSSCP
1guqA -------------MTQFNPVDHPHRRYNPLTGQWILVSPHRAKRPWQGAQETPAK-QVLPAHDP


          70        80         90       100       110       120       
           |         |          |         |         |         |       
T0204 FCIGREQECAPELFRVPDHDPNW.KLRVIENLYPALSRNLETQSTQPETGTSRTIVGFGFHDVV
1guqA DCF----LCAGNVRVTGDKNPDYtGTYVFTNDFAALMSDTPDAPE-SHDPLMRCQSARGTSRVI


      130       140       150       160       170       180       190 
        |         |         |         |         |         |         | 
T0204 IESPVHSIQLSDIDPVGIGDILIAYKKRINQIAQHDSINYIQVFKNQGASAGASMSHSHSQMMA
1guqA CFSPDHSKTLPELSVAALTEIVKTWQEQTAELGK--TYPWVQVFENKGAAMGCSNPHPGGQIWA


            200       210       220            230       240       250
              |         |         |              |         |         |
T0204 LPVVPPTVSSRLDGTKDYFEETGKCCLCEAKSKHFV.....IDESSHFVSVAPFAATYPFEIWI
1guqA NSFLPNEAEREDRLQKEYFAEQKSPMLVDYVQRELAdgsrtVVETEHWLAVVPYWAAWPFETLL


             260       270       280        290       300       310   
               |         |         |          |         |         |   
T0204 IPKDHSSHFHHLDDVKAVDLGGLLKLMLQKIAKQLND.PPYNYMIHTSPLKVTESQLPYTHWFL
1guqA LPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCsFPYSMGWHGAPFNGEE--NQHWQLHA


             320       330          340       350           
               |         |            |         |           
T0204 QIVPQL...SGVGGFEIGTGCYIN...PVFPEDVAKVMREV---slt.......
1guqA HFYPPLlrsATVRKFMVGYEMLAEtqrDLTAEQAAERLRAV---sdihfresgv