# CreatePredAlphaCost pred_alpha2k alpha11 T0203.t2k.alpha.rdb 2 alpha alpha_prev sum 
CreatePredAlphaCost pred_alpha04 alpha11 T0203.t04.alpha.rdb 2 alpha alpha_prev sum 

SetCost wet6.5 3 near_backbone 3 way_back 3 dry5 5 dry6.5 6 dry8 8 dry12 8 \
	phobic_fit 5 \
	sidechain 6 \
	bystroff 5 \
	soft_clashes 10  backbone_clashes 2 \
	break 100  \
	pred_alpha04 5 \
	constraints 10 \
	hbond_geom 0.1 \
	hbond_geom_backbone 0.2 \
	hbond_geom_beta 0.4 \
	hbond_geom_beta_pair 2 

# 	pred_alpha2k 5 \


include T0203.t04.stride-ebghtl.constraints
include T0203.t04.str2.constraints
# include T0203.t04.alpha.constraints
include T0203.t04.bys.constraints
# include T0203.t04.dssp-ebghstl.constraints
include T0203.t04.dssp-ehl2.constraints


# one model made it longer and hbonded with the opposite phase, but
# aligned the same residues
# SheetConstraint Y13 M15  	Q371 A373  	hbond Y14	10
SheetConstraint (T0203)A23 (T0203)G28	(T0203)P59 (T0203)A64	hbond (T0203)T25

SheetConstraint A23 I27  	P372 T368  	hbond W26	10

SheetConstraint R81 E84		R93 S90		3
SheetConstraint S95 W91		T98 R102	2	hbond t98



SheetConstraint M159 E162	V168 S165 	Hbond S165	3
SheetConstraint S165 D169	S177 T173	Hbond I166	3

# copy from the alignment (though probably wrong)

SheetConstraint (T0203)G172 (T0203)V176	(T0203)N183 (T0203)E179	hbond (T0203)C174
SheetConstraint (T0203)E178 (T0203)K184	(T0203)I209 (T0203)L215	hbond (T0203)L182


SheetConstraint M228 A232  	S240 V236  	hbond C230	10
SheetConstraint F314 A317  	P324 I321  	hbond Y315	10

# two choices of alignment here:
SheetConstraint G320 A323  	H346 V349  	hbond I322	1
# SheetConstraint G320 A323  	S347 G350  	hbond I321	1


SheetConstraint (T0203)I209 (T0203)L215	(T0203)V254 (T0203)P248	hbond (T0203)L211
SheetConstraint (T0203)V237 (T0203)S240	(T0203)S290 (T0203)T293	hbond (T0203)L239
SheetConstraint (T0203)Q249 (T0203)R252	(T0203)A266 (T0203)S263	hbond (T0203)E251
SheetConstraint (T0203)L282 (T0203)M284	(T0203)G235 (T0203)V237	hbond (T0203)Y283
SheetConstraint (T0203)F314 (T0203)A317	(T0203)P324 (T0203)I321	hbond (T0203)Y315