SetCost wet6.5 3 near_backbone 3 way_back 3 dry5 5 dry6.5 6 dry8 8 dry12 8 \
	phobic_fit 5 \
	sidechain 6 \
	bystroff 5 \
	soft_clashes 10  backbone_clashes 2 \
	break 30  \
	pred_alpha2k 5 \
	pred_alpha04 5 \
	constraints 10 \
	hbond_geom 0.1 \
	hbond_geom_backbone 0.2 \
	hbond_geom_beta 0.4 \
	hbond_geom_beta_pair 2 

// Add the following for extra-cellular proteins:
# 	known_ssbond 0.5	# and add SSbond commands
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	ssbond, hbond, or just arbitrary pairs of atoms.

include T0203.t2k.dssp-ehl2.constraints
include T0203.t2k.stride-ebghtl.constraints
include T0203.t2k.str2.constraints
include T0203.t2k.bys.constraints
include T0203.t04.dssp-ehl2.constraints
include T0203.t04.stride-ebghtl.constraints
include T0203.t04.str2.constraints
include T0203.t04.bys.constraints

include T0203.t2k-thin50.mi.constraints
include T0203.t04-thin40.mi.constraints
include T0203.t04-thin50.mi.constraints