CreatePredAlphaCost pred_alpha2k alpha11 T0203.t2k.alpha.rdb 2 alpha alpha_prev sum 
CreatePredAlphaCost pred_alpha04 alpha11 T0203.t04.alpha.rdb 2 alpha alpha_prev sum 

SetCost wet6.5 3 near_backbone 3 way_back 3 dry5 5 dry6.5 6 dry8 8 dry12 8 \
	phobic_fit 5 \
	sidechain 6 \
	bystroff 5 \
	soft_clashes 10  backbone_clashes 2 \
	break 40  \
	pred_alpha04 5 \
 	pred_alpha2k 5 \
	constraints 60 \
	hbond_geom 0.1 \
	hbond_geom_backbone 0.2 \
	hbond_geom_beta 0.4 \
	hbond_geom_beta_pair 1.5




// Add the following for extra-cellular proteins:
# 	known_ssbond 0.5	# and add SSbond commands
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	ssbond, hbond, or just arbitrary pairs of atoms.

include T0203.t04.stride-ebghtl.constraints
include T0203.t04.str2.constraints
include T0203.t04.alpha.constraints
include T0203.t04.bys.constraints
include T0203.t04.dssp-ebghstl.constraints
include T0203.t04.dssp-ehl2.constraints

include T0203.t2k.stride-ebghtl.constraints
include T0203.t2k.str2.constraints
include T0203.t2k.alpha.constraints
include T0203.t2k.bys.constraints
include T0203.t2k.dssp-ebghstl.constraints
include T0203.t2k.dssp-ehl2.constraints

# file generated by validate2rr
# based on 104 inputs.
# limited to raw score .7 or greater
Constraint	S90.CB	A124.CB	-10.	7.0	12.0	0.952
Constraint	V237.CB	I271.CB	-10.	7.0	12.0	0.924
Constraint	S90.CB	W120.CB	-10.	7.0	12.0	0.778
Constraint	V236.CB	I274.CB	-10.	7.0	12.0	0.741