# List of top-scoring protein chains for T0203.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rxxA 421 8.20e-04 2jdxA 385 2.49e-02 1jdw d.126.1.2 41139 8jdwA 386 3.83e-02 1jdw d.126.1.2 41132 1jdw 423 3.94e-02 1jdw d.126.1.2 41129 1s35A 214 5.14e-01 1lxyA 409 9.33e-01 1s9rA 410 9.34e-01 1bg7 176 1.68e+00 2fha a.25.1.1 16686 1bwdA 348 2.54e+00 1jdw d.126.1.2 41140 4jdwA 423 2.87e+00 1jdw d.126.1.2 41137 1hkxA 147 3.69e+00 d.17.4.7 83567 1ph6B 217 4.22e+00 b.40.4.3 88098 1jb7B 260 4.23e+00 1otcB b.40.4.3 62839 1ph4B 216 4.27e+00 b.40.4.3 88090 1ucyK 259 4.47e+00 1ucyE 4bcl 366 4.75e+00 4bcl b.75.1.1 27968 1id5H 256 5.03e+00 1mkxK 308 5.06e+00 5ptp b.47.1.2 26204 1h1tA 159 6.64e+00 c.26.1.3 83458 1qjcA 158 6.86e+00 1b6tA c.26.1.3 63328 1obbA 480 9.73e+00 c.2.1.5 86760 d.162.1.2 86761 1j1nA 492 1.01e+01 c.94.1.1 83978 1diiC 80 1.13e+01 1diiC a.3.1.1 15925 1nxuA 333 1.16e+01 c.122.1.1 86389 1s20A 340 1.17e+01 1nnlA 225 1.19e+01 c.108.1.4 85906 1mgrA 99 1.23e+01 d.1.1.2 79106 1l8lA 225 1.35e+01 c.108.1.4 84562 1cbkA 160 1.37e+01 1hka d.58.30.1 39435 1dctA 324 1.45e+01 6mhtA c.66.1.26 34244 1jcuA 208 1.68e+01 d.115.1.1 71634 1eb6A 177 1.75e+01 d.92.1.12 64895 1vioA 243 1.90e+01 1mfrA 176 2.07e+01 2fha a.25.1.1 16692 2hlpA 303 2.10e+01 1ceqA c.2.1.5 30141 d.162.1.1 42108 1o6zA 303 2.12e+01 c.2.1.5 81107 d.162.1.1 81108 1d3aA 303 2.15e+01 1ceqA c.2.1.5 30143 d.162.1.1 42110 1g7oA 215 2.21e+01 1g7oA a.45.1.1 60332 c.47.1.5 60333 1c3rA 375 2.21e+01 1c3pA c.42.1.2 32607 1k4nA 192 2.27e+01 d.32.1.5 72059 1qi3A 429 2.29e+01 1jdc b.71.1.1 27794 c.1.8.1 28781 1c3pA 375 2.30e+01 1c3pA c.42.1.2 32606 1fxjA 331 2.34e+01 1fwyA b.81.1.4 28062 c.68.1.5 34520 1sbp 310 2.42e+01 1sbp c.94.1.1 35760 1vhwA 253 2.47e+01 1gdeA 389 2.59e+01 c.67.1.1 60456 1xgsA 295 2.61e+01 1bn5 a.4.5.25 16216 d.127.1.1 41153 1djuA 388 2.66e+01 1bjwA c.67.1.1 59116 1mhpH 219 2.80e+01 b.1.1.1 84967 b.1.1.2 84968 2amg 418 2.81e+01 1jdc b.71.1.1 27796 c.1.8.1 28783 1qi5A 429 2.82e+01 1jdc b.71.1.1 27792 c.1.8.1 28779 1otdA 125 2.87e+01 1gcyA 527 2.90e+01 1jdc b.71.1.1 27788 c.1.8.1 28775 1riqA 465 3.07e+01 1k5cA 335 3.09e+01 b.80.1.3 72076 1hv9A 456 3.10e+01 1fwyA b.81.1.4 28060 c.68.1.5 34518 1uypA 432 3.16e+01 1qi4A 429 3.18e+01 1jdc b.71.1.1 27791 c.1.8.1 28778 1nxjA 183 3.23e+01 c.8.7.1 86382 1jdc 429 3.24e+01 1jdc b.71.1.1 27789 c.1.8.1 28776 1h4jA 599 3.43e+01 4aahA b.70.1.1 60590 1bwvA 493 3.53e+01 1burA c.1.14.1 29372 d.58.9.1 39278 1onqA 283 3.73e+01 1fotA 318 3.74e+01 1cdkA d.144.1.7 59938 1obfO 335 3.82e+01 c.2.1.3 86768 d.81.1.1 86769 1nfp 228 3.88e+01 1nfp c.1.16.2 29555 1m4jA 142 3.91e+01 d.109.1.2 78602