# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1rxxA	421	4.33e-06			
1jdw	423	8.60e-05	1jdw	d.126.1.2	41129
1s9rA	410	1.07e-04			
1lxyA	409	1.07e-04			
1h70A	255	6.88e-02	1h70A	d.126.1.3	60711
1ovqA	138	1.72e+00			
1uypA	432	2.37e+00			
1utwA	432	2.45e+00			
1e08A	371	3.47e+00		i.4.1.1	45914
1qjcA	158	5.02e+00	1b6tA	c.26.1.3	63328
1b6tA	159	5.07e+00	1b6tA	c.26.1.3	31600
1fiwA	290	6.66e+00	5ptp		
1hfeL	421	7.64e+00	1fehA	c.96.1.1	36018
				d.58.1.5	39001
1q33A	292	7.73e+00			
1kwhA	492	8.65e+00		c.94.1.1	68876
1isiA	265	9.48e+00		e.4.1.1	71394
1xjo	284	9.70e+00	1xjo	c.56.5.4	33843
3pgk	416	9.87e+00	16pk	c.86.1.1	35451
1j1nA	492	1.19e+01		c.94.1.1	83978
1ku0A	388	1.22e+01		c.69.1.18	72994
1ivg	388	1.26e+01	2qwc	b.68.1.1	27578
1ivd	388	1.28e+01	2qwc	b.68.1.1	27568
1jw9B	249	1.36e+01		c.111.1.1	67377
1uocA	289	1.36e+01			
1nu0A	138	1.39e+01			
1kbqA	273	1.53e+01		c.23.5.3	68391
1lp4A	332	1.65e+01		d.144.1.7	74170
1m2rA	327	1.67e+01		d.144.1.7	84760
1lpuA	332	1.68e+01		d.144.1.7	74177
1qvjA	292	1.70e+01			
1rtfB	252	1.72e+01	5ptp		
1sqsA	242	1.77e+01			
1d4aA	273	1.80e+01	1d4aA	c.23.5.3	31219
1vgvA	384	1.80e+01			
1ac5	483	1.90e+01	1ac5	c.69.1.5	34653
1om1A	332	2.15e+01			
1mhlC	466	2.25e+01	1mhlC		
1p57B	255	2.30e+01			
1uxoA	192	2.31e+01			
1qq9A	284	2.36e+01	1xjo	c.56.5.4	33841
1d2vC	466	2.37e+01	1mhlC		
1h4wA	224	2.39e+01		b.47.1.2	65622
1hqoA	258	2.55e+01	1hqoA	a.45.1.1	17749
				c.47.1.5	33043
1b37B	472	2.61e+01	1b37B	c.3.1.2	30390
				d.16.1.5	37954
1phk	298	2.62e+01	1cdkA	d.144.1.7	41635
1o4vA	183	2.63e+01		c.23.8.1	86628
1cxpC	466	2.71e+01	1mhlC		
1k0dA	260	2.91e+01		a.45.1.1	67930
				c.47.1.5	67931
1ksfX	758	2.92e+01		a.174.1.1	77522
				c.37.1.20	77523
				c.37.1.20	77524
1g6wA	261	2.93e+01	1hqoA	a.45.1.1	17751
				c.47.1.5	33045
1k4nA	192	2.97e+01		d.32.1.5	72059
1a3k	137	2.97e+01	1a3k	b.29.1.3	24218
1i1qB	192	2.98e+01	1qdlB	c.23.16.1	61544
1b37A	472	3.04e+01	1b37B	c.3.1.2	30389
				d.16.1.5	37953
1s2dA	167	3.21e+01			
1tfe	145	3.22e+01	1tfe	d.43.1.1	38680
1b5qA	472	3.38e+01	1b37B	c.3.1.2	30404
				d.16.1.5	37968
1k47A	337	3.38e+01		d.14.1.5	72040
				d.58.26.4	72041
1sqc	631	3.52e+01	2sqcA	a.102.4.2	18858
				a.102.4.2	18859
1riqA	465	3.56e+01			
1vhwA	253	3.68e+01			
1cs8A	316	3.78e+01	1cs8A	d.3.1.1	37065
1jwhA	337	3.85e+01		d.144.1.7	71913
1mh0A	287	3.88e+01		b.47.1.2	79110
1f6dA	376	3.88e+01	1f6dA	c.87.1.3	35467
1cyi	90	3.89e+01	1ctj	a.3.1.1	15804
1gqyA	475	3.95e+01		c.5.1.1	83305
				c.59.1.1	83306
				c.72.2.1	83307