# List of top-scoring protein chains for T0203.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rxxA 421 7.71e-04 2jdxA 385 3.72e-02 1jdw d.126.1.2 41139 8jdwA 386 8.03e-02 1jdw d.126.1.2 41132 1jdw 423 8.46e-02 1jdw d.126.1.2 41129 1bwdA 348 1.24e+00 1jdw d.126.1.2 41140 1lxyA 409 1.38e+00 1s9rA 410 1.38e+00 1s35A 214 1.87e+00 1bg7 176 2.32e+00 2fha a.25.1.1 16686 1sbp 310 3.34e+00 1sbp c.94.1.1 35760 4bcl 366 3.36e+00 4bcl b.75.1.1 27968 1ucyK 259 3.45e+00 1ucyE 1id5H 256 3.81e+00 1mkxK 308 3.94e+00 5ptp b.47.1.2 26204 1gmlA 178 5.29e+00 c.8.5.2 70273 4jdwA 423 5.97e+00 1jdw d.126.1.2 41137 1ph6B 217 7.13e+00 b.40.4.3 88098 1ph4B 216 7.20e+00 b.40.4.3 88090 1jb7B 260 7.20e+00 1otcB b.40.4.3 62839 1j1nA 492 7.60e+00 c.94.1.1 83978 1nxuA 333 7.91e+00 c.122.1.1 86389 1s20A 340 7.91e+00 1mgrA 99 9.87e+00 d.1.1.2 79106 1nnlA 225 1.03e+01 c.108.1.4 85906 1h1tA 159 1.04e+01 c.26.1.3 83458 1qjcA 158 1.08e+01 1b6tA c.26.1.3 63328 1l8lA 225 1.20e+01 c.108.1.4 84562 1obbA 480 1.24e+01 c.2.1.5 86760 d.162.1.2 86761 1ewrA 649 1.34e+01 1ewqA a.113.1.1 19073 c.37.1.12 32387 c.55.6.1 33744 1ewqA 765 1.47e+01 1ewqA a.113.1.1 19069 c.37.1.12 32383 c.55.6.1 33740 d.75.2.1 39743 1fw6A 768 1.47e+01 1ewqA a.113.1.1 19071 c.37.1.12 32385 c.55.6.1 33742 d.75.2.1 39745 1onqA 283 1.57e+01 1hkxA 147 1.63e+01 d.17.4.7 83567 1m4jA 142 1.72e+01 d.109.1.2 78602 1e5rA 290 1.97e+01 1e5rA b.82.2.4 59276 1diiC 80 2.20e+01 1diiC a.3.1.1 15925 1eb6A 177 2.32e+01 d.92.1.12 64895 1c3rA 375 2.44e+01 1c3pA c.42.1.2 32607 1c3pA 375 2.47e+01 1c3pA c.42.1.2 32606 1un8A 552 2.55e+01 1un9A 552 2.55e+01 1dl5A 317 2.56e+01 1dl5A c.66.1.7 64720 d.197.1.1 64721 1dctA 324 2.83e+01 6mhtA c.66.1.26 34244 1nxjA 183 2.84e+01 c.8.7.1 86382 1nqmA 136 2.88e+01 b.61.1.1 86038 1cbkA 160 2.92e+01 1hka d.58.30.1 39435 1n9wA 422 2.94e+01 b.40.4.1 85473 d.104.1.1 85474 2rtm 135 3.00e+01 1swuA b.61.1.1 27283 1vioA 243 3.02e+01 1mfrA 176 3.02e+01 2fha a.25.1.1 16692 1i9hA 139 3.04e+01 b.61.1.1 62091 1h09A 338 3.05e+01 b.109.1.1 83420 c.1.8.8 83421 1l9xA 315 3.05e+01 c.23.16.1 73762 1obaA 339 3.13e+01 1e5eA 404 3.19e+01 1ibjA c.67.1.3 59265 1eg7A 557 3.25e+01 1eg7A c.37.1.10 32241 1fpmA 557 3.26e+01 c.37.1.10 59945 1k4nA 192 3.30e+01 d.32.1.5 72059 1stp 159 3.30e+01 1swuA b.61.1.1 27406 1k5cA 335 3.32e+01 b.80.1.3 72076 1vhwA 253 3.33e+01 1fxjA 331 3.41e+01 1fwyA b.81.1.4 28062 c.68.1.5 34520 1otdA 125 3.52e+01 1o6zA 303 3.88e+01 c.2.1.5 81107 d.162.1.1 81108 1kyhA 276 3.90e+01 c.72.1.4 73222 1fdr 248 3.94e+01 1fdr b.43.4.2 25653 c.25.1.1 31543 2hlpA 303 3.94e+01 1ceqA c.2.1.5 30141 d.162.1.1 42108 1d3aA 303 3.99e+01 1ceqA c.2.1.5 30143 d.162.1.1 42110