# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rxxA 421 8.97e-06 1jdw 423 4.33e-04 1jdw d.126.1.2 41129 1s9rA 410 1.60e-02 1hv9A 456 7.92e-02 1fwyA b.81.1.4 28060 c.68.1.5 34518 1qjcA 158 9.20e-02 1b6tA c.26.1.3 63328 1p3dA 475 1.03e-01 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730 1fxjA 331 2.38e-01 1fwyA b.81.1.4 28062 c.68.1.5 34520 1vhwA 253 2.79e-01 1hlrA 907 5.11e-01 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 1o5zA 442 6.51e-01 1o8bA 219 6.82e-01 c.35.1.2 81180 d.58.40.1 81181 1alo 907 9.45e-01 1alo 1n7hA 381 9.47e-01 c.2.1.2 80250 1g61A 228 1.29e+00 1g61A d.126.1.1 41126 1h70A 255 1.53e+00 1h70A d.126.1.3 60711 1iv8A 720 1.76e+00 b.71.1.1 76842 c.1.8.1 76843 1q33A 292 1.99e+00 1ecpA 238 2.06e+00 1ecpA c.56.2.1 33775 1k9sA 237 2.21e+00 c.56.2.1 68359 1bs0A 384 2.53e+00 1bs0A c.67.1.4 34490 1kaeA 434 2.57e+00 c.82.1.2 72247 1jbwA 428 2.62e+00 c.59.1.2 62860 c.72.2.2 62861 1e19A 314 2.65e+00 1b7bA c.73.1.1 34967 1f74A 293 2.81e+00 1nal3 c.1.10.1 29079 1r64A 481 3.07e+00 4bcl 366 3.07e+00 4bcl b.75.1.1 27968 1diiC 80 3.13e+00 1diiC a.3.1.1 15925 1heiA 451 3.15e+00 1heiA c.37.1.14 32463 c.37.1.14 32464 1vhrA 184 3.27e+00 1vhrA c.45.1.1 32651 1f6dA 376 3.68e+00 1f6dA c.87.1.3 35467 1dpgA 485 3.73e+00 1dpgA c.2.1.3 30074 d.81.1.5 39989 1nngA 153 3.93e+00 1gdeA 389 4.08e+00 c.67.1.1 60456 1riqA 465 4.27e+00 1id0A 152 4.29e+00 d.122.1.3 66111 1q7zA 566 4.35e+00 1fzrA 138 4.35e+00 1fzrA c.52.1.17 33336 1qgvA 142 4.37e+00 1qgvA c.47.1.8 33056 1bg6 359 4.59e+00 1bg6 a.100.1.5 18810 c.2.1.6 30214 1sbp 310 4.62e+00 1sbp c.94.1.1 35760 1i5gA 144 4.63e+00 1ewxA c.47.1.10 61784 1ijgA 309 4.98e+00 1fouA e.27.1.1 62493 1d6jA 211 5.06e+00 1d6jA c.37.1.4 31940 1dd9A 338 5.07e+00 1dd9A e.13.1.1 43254 1ivg 388 5.57e+00 2qwc b.68.1.1 27578 1gmlA 178 5.77e+00 c.8.5.2 70273 1h09A 338 5.81e+00 b.109.1.1 83420 c.1.8.8 83421 1dqaA 467 6.22e+00 1dqaA d.58.20.1 39364 d.179.1.1 42585 1gxjA 186 6.89e+00 d.215.1.1 70707 1o60A 292 7.17e+00 1m0dA 138 7.37e+00 c.52.1.17 74354 1pg4A 652 7.72e+00 e.23.1.1 88067 1io2A 213 7.72e+00 1ekeA c.55.3.1 62612 1f8fA 371 8.00e+00 b.35.1.2 83246 c.2.1.1 83247 1cqxA 403 8.15e+00 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1eemA 241 8.16e+00 1eemA a.45.1.1 17717 c.47.1.5 33011 1dkuA 317 8.28e+00 1dkuA c.61.1.2 34118 c.61.1.2 34119 1msc 129 8.51e+00 1msc d.85.1.1 40039 1by2 119 8.69e+00 1by2 d.170.1.1 42452 5reqA 727 9.00e+00 1reqA c.1.19.1 29632 c.23.6.1 31259 1reqA 727 9.01e+00 1reqA c.1.19.1 29620 c.23.6.1 31247 1pz1A 333 9.04e+00 1ctn 540 9.14e+00 1ctn b.1.18.2 21876 c.1.8.5 29005 d.26.3.1 38439 1ijbA 202 9.20e+00 c.62.1.1 71229 1ji8A 111 9.71e+00 d.203.1.1 66733 1o6zA 303 9.78e+00 c.2.1.5 81107 d.162.1.1 81108 16pk 415 1.01e+01 16pk c.86.1.1 35454 1iirA 415 1.02e+01 1iirA c.87.1.5 62453 1qgdA 662 1.08e+01 c.36.1.6 88367 c.36.1.10 88368 c.48.1.1 88369 1k7jA 206 1.10e+01 d.115.1.1 72103 1uanA 227 1.11e+01 4uagA 437 1.11e+01 4uagA c.5.1.1 30651 c.59.1.1 33952 c.72.2.1 34955 1a5t 334 1.14e+01 1a5t a.80.1.1 18450 c.37.1.20 32423 1obfO 335 1.14e+01 c.2.1.3 86768 d.81.1.1 86769 1ea7A 310 1.18e+01 c.41.1.1 70086 1od6A 160 1.20e+01 c.26.1.3 86836 1n2eA 300 1.21e+01 c.26.1.4 85268 1j1nA 492 1.23e+01 c.94.1.1 83978 1cv2A 296 1.30e+01 1bn6A c.69.1.8 34680 1kyhA 276 1.37e+01 c.72.1.4 73222 1ad1A 266 1.38e+01 1aj2 c.1.21.1 29668 1bif 469 1.38e+01 1bif c.37.1.7 31961 c.60.1.4 34003 1g6sA 427 1.40e+01 1eps d.68.2.2 39584 1cf9A 753 1.44e+01 1cf9A c.23.16.3 31441 e.5.1.1 42815 1i60A 278 1.45e+01 c.1.15.4 71118 1os8A 223 1.45e+01 1sgt 223 1.45e+01 5ptp b.47.1.1 25814 1f8yA 157 1.47e+01 1f8xA c.23.14.1 31395 1fnsA 196 1.52e+01 1auq c.62.1.1 34136 1r2rA 248 1.54e+01 1nnlA 225 1.57e+01 c.108.1.4 85906 1rf6A 427 1.57e+01 1hrnA 337 1.58e+01 1smrA b.50.1.2 26869 1o8xA 146 1.58e+01 c.47.1.10 86681 1b1cA 181 1.60e+01 1amoA c.23.5.2 31212 1g8sA 230 1.67e+01 1ktbA 405 1.72e+01 b.71.1.1 72960 c.1.8.1 72961 1fbnA 230 1.75e+01 1fbnA c.66.1.3 34181 1o5kA 306 1.77e+01 1k30A 368 1.77e+01 c.112.1.1 68067 1m4jA 142 1.78e+01 d.109.1.2 78602 1czaN 917 1.80e+01 1qhaA c.55.1.3 33463 c.55.1.3 33464 c.55.1.3 33465 c.55.1.3 33466 2trxA 108 1.86e+01 1thx c.47.1.1 32719 1ad4A 266 1.88e+01 1aj2 c.1.21.1 29670 1rzjG 321 1.91e+01 1uu1A 335 1.92e+01 1id1A 153 1.94e+01 1id1A c.2.1.9 62286 1914 232 1.98e+01 1914 d.49.1.1 83028 d.49.1.1 83029 1o1yA 239 1.98e+01 c.23.16.1 86554 1pbgA 468 1.99e+01 1e70M c.1.8.4 28946 1quqB 121 2.02e+01 1quqB b.40.4.3 25305 1cfzA 162 2.02e+01 1cfzA c.56.1.1 33754 1viuA 203 2.04e+01 1euvA 221 2.04e+01 1euvA d.3.1.7 37133 1fgs 428 2.06e+01 1fgs c.59.1.2 33959 c.72.2.2 34962 1b0pA 1231 2.09e+01 c.36.1.8 31831 c.36.1.12 31832 c.48.1.3 33104 c.64.1.1 34157 d.58.1.5 39003 1mj5A 302 2.13e+01 1jl3A 139 2.14e+01 c.44.1.1 66826 1mzhA 225 2.16e+01 c.1.10.1 79698 1dorA 311 2.19e+01 2dorA c.1.4.1 28595 1fc4A 401 2.19e+01 1bs0A c.67.1.4 59760 1tph1 247 2.20e+01 1amk 1jubA 311 2.20e+01 1qlwA 328 2.21e+01 1qlwA c.69.1.15 34722 1azo 232 2.22e+01 1azo c.52.1.14 33329 1neyA 247 2.29e+01 c.1.1.1 80449 1cl1A 395 2.30e+01 1cl2A c.67.1.3 34395 1dcfA 136 2.33e+01 1dcfA c.23.1.2 31124 1kutA 230 2.35e+01 d.143.1.1 73017 1p80A 753 2.39e+01 1m7gA 211 2.41e+01 c.37.1.4 78724 1b6rA 355 2.46e+01 1b6rA b.84.2.1 28241 c.30.1.1 31648 d.142.1.2 41493 1jbkA 195 2.47e+01 c.37.1.20 71631 1o7nA 449 2.52e+01 b.33.1.2 81162 d.129.3.3 81163 1s14A 194 2.52e+01 1dljA 402 2.53e+01 1dliA a.100.1.4 18808 c.2.1.6 30212 c.26.3.1 31621 1t2aA 375 2.54e+01 1byqA 228 2.54e+01 1yer d.122.1.1 41100 1jmkC 230 2.54e+01 c.69.1.22 71747 2dorA 311 2.55e+01 2dorA c.1.4.1 28593 1ah6 220 2.56e+01 1yer d.122.1.1 41094 1eg9A 449 2.57e+01 1ndoA b.33.1.2 24443 d.129.3.3 41322 1p9qC 256 2.58e+01 1qo0D 196 2.61e+01 1qo0D c.23.1.3 31125 1qk8A 146 2.72e+01 1ewxA c.47.1.10 33061 1o5iA 249 2.73e+01 1pvc3 238 2.77e+01 1aym3 1o0pA 104 2.77e+01 d.58.7.1 86535 1lnsA 763 2.86e+01 a.40.2.1 78101 b.18.1.13 78102 c.69.1.21 78103 1n8fA 350 2.87e+01 c.1.10.4 85397 1jb7B 260 2.88e+01 1otcB b.40.4.3 62839 1gg1A 350 2.89e+01 1qr7A c.1.10.4 29187 1ep3B 262 2.91e+01 1ep2B b.43.4.2 25664 c.25.1.3 31554 1ogdA 131 2.92e+01 1fs0E 138 2.94e+01 1aqt a.2.10.1 59997 b.93.1.1 59998 1g9mG 321 2.96e+01 1gc1G d.172.1.1 42492 1nxuA 333 2.96e+01 c.122.1.1 86389 2bvwA 362 3.00e+01 1bvwA c.6.1.1 30666 1fcdA 401 3.02e+01 1fcdA c.3.1.5 30593 c.3.1.5 30594 d.87.1.1 40218 1gg6C 97 3.03e+01 5ptp 1i45A 248 3.03e+01 1amk c.1.1.1 61665 1ehiA 377 3.04e+01 1iow c.30.1.2 31716 d.142.1.1 41484 1ofuA 320 3.07e+01 c.32.1.1 86972 d.79.2.1 86973 1auiA 521 3.08e+01 1auiA d.159.1.3 42085 1k77A 260 3.09e+01 c.1.15.5 72096 1iugA 352 3.12e+01 1edqA 540 3.13e+01 1ctn b.1.18.2 21873 c.1.8.5 29002 d.26.3.1 38436 1nar 290 3.14e+01 1nar c.1.8.5 28988 1hl2A 297 3.17e+01 c.1.10.1 83581 1mg4A 113 3.18e+01 d.15.11.1 84953 1iuqA 367 3.19e+01 1mi3A 322 3.23e+01 1gpmA 525 3.25e+01 1gpmA c.23.16.1 31405 c.26.2.1 31608 d.52.2.1 38826 1pea 385 3.29e+01 1pea c.93.1.1 35662 1f9aA 168 3.38e+01 1f9aA c.26.1.3 31602 1v4vA 376 3.48e+01 1nxjA 183 3.57e+01 c.8.7.1 86382 1ja1A 622 3.61e+01 1amoA b.43.4.1 62803 c.23.5.2 62804 c.25.1.4 62805 1jfuA 186 3.61e+01 c.47.1.10 62940 1cs1A 386 3.64e+01 1ibjA c.67.1.3 34399 1of8A 370 3.65e+01 1r5pA 108 3.70e+01 1dxeA 256 3.71e+01 1dxeA c.1.12.5 29310 1i1qB 192 3.81e+01 1qdlB c.23.16.1 61544 1kafA 108 3.85e+01 d.199.1.1 68372 1gewA 356 3.95e+01 1gewA c.67.1.1 60470 1pa2A 306 3.97e+01 1bgp a.93.1.1 18693 1rwiA 270 3.97e+01