# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1rxxA	421	2.77e-07			
1jdw	423	1.14e-04	1jdw	d.126.1.2	41129
1s9rA	410	1.96e-04			
1h70A	255	4.49e-01	1h70A	d.126.1.3	60711
1uypA	432	5.79e-01			
1d2vC	466	2.29e+00	1mhlC		
1cxpC	466	2.58e+00	1mhlC		
1f6dA	376	2.71e+00	1f6dA	c.87.1.3	35467
1d4aA	273	2.84e+00	1d4aA	c.23.5.3	31219
1uocA	289	3.12e+00			
1oshA	232	3.69e+00			
1qjcA	158	4.86e+00	1b6tA	c.26.1.3	63328
1hfeL	421	5.55e+00	1fehA	c.96.1.1	36018
				d.58.1.5	39001
1jb7B	260	5.99e+00	1otcB	b.40.4.3	62839
1fxlA	167	7.22e+00	1b7fA	d.58.7.1	39183
				d.58.7.1	39184
1ivg	388	7.52e+00	2qwc	b.68.1.1	27578
1i7pA	274	7.80e+00		b.43.4.2	66048
				c.25.1.1	66049
1phk	298	9.27e+00	1cdkA	d.144.1.7	41635
1nu0A	138	9.37e+00			
1ctn	540	1.01e+01	1ctn	b.1.18.2	21876
				c.1.8.5	29005
				d.26.3.1	38439
1riqA	465	1.07e+01			
1dd9A	338	1.14e+01	1dd9A	e.13.1.1	43254
1om1A	332	1.26e+01			
1rtfB	252	1.27e+01	5ptp		
1k47A	337	1.28e+01		d.14.1.5	72040
				d.58.26.4	72041
1kte	105	1.35e+01	1kte	c.47.1.1	32771
1m2rA	327	1.35e+01		d.144.1.7	84760
1a6o	332	1.48e+01	1a6o		
1g61A	228	1.53e+01	1g61A	d.126.1.1	41126
1ogdA	131	1.62e+01			
1vhwA	253	1.80e+01			
1sbp	310	1.88e+01	1sbp	c.94.1.1	35760
1vhxA	150	1.90e+01			
1nrlA	316	1.94e+01			
1frb	315	1.94e+01	1frb	c.1.7.1	28665
1l1jA	239	2.08e+01		b.47.1.1	84516
1m0kA	262	2.11e+01		f.13.1.1	78344
1ndh	272	2.12e+01	1ndh	b.43.4.2	25662
				c.25.1.1	31552
1xjo	284	2.18e+01	1xjo	c.56.5.4	33843
1cjaA	342	2.27e+01	1cjaA	d.144.1.3	41708
1jnyA	435	2.30e+01		b.43.3.1	66982
				b.44.1.1	66983
				c.37.1.8	66984
1e3aB	560	2.32e+01	1ajqB		
1l9xA	315	2.32e+01		c.23.16.1	73762
1p57B	255	2.35e+01			
1fpzA	212	2.40e+01	1fpzA	c.45.1.1	59976
1nq7A	244	2.44e+01			
1rss	151	2.72e+01	1rss	a.75.1.1	18392
1fiwA	290	2.77e+01	5ptp		
1q77A	138	2.98e+01			
1h8dH	260	3.03e+01	5ptp		
1uxoA	192	3.04e+01			
1gk9B	557	3.38e+01			
1azo	232	3.40e+01	1azo	c.52.1.14	33329
1mpgA	282	3.44e+01	1mpgA	a.96.1.3	18747
				d.129.1.2	41296
1muwA	386	3.51e+01		c.1.15.3	79495
1c3wA	222	3.52e+01	1c3wA	f.13.1.1	43405
1jw9B	249	3.63e+01		c.111.1.1	67377
1qo0D	196	3.64e+01	1qo0D	c.23.1.3	31125
1b1cA	181	3.67e+01	1amoA	c.23.5.2	31212
4xis	387	3.69e+01	4xis	c.1.15.3	29421
1mnnA	340	3.82e+01		b.2.5.7	79324
1v7zA	260	3.87e+01