# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1pfkA 320 2.44e-01 3pfk c.89.1.1 35575 2pfkA 320 3.05e-01 3pfk c.89.1.1 35577 1j0aA 325 3.36e-01 c.79.1.1 83871 6pfkA 319 8.65e-01 3pfk c.89.1.1 35583 1trb 320 1.06e+00 1trb c.3.1.5 30529 c.3.1.5 30530 1bksB 397 1.34e+00 2tysB c.79.1.1 35285 1uirA 314 1.47e+00 3pfk 319 1.74e+00 3pfk c.89.1.1 35581 1pwhA 327 1.80e+00 1qopB 396 1.83e+00 2tysB c.79.1.1 35270 1k8yB 396 1.86e+00 c.79.1.1 72184 1inlA 296 1.88e+00 c.66.1.17 66220 2tysB 397 1.93e+00 2tysB c.79.1.1 35272 1jq3A 296 1.98e+00 c.66.1.17 67079 4pfk 319 2.21e+00 3pfk c.89.1.1 35582 2wsyB 396 2.93e+00 2tysB c.79.1.1 35288 1v4vA 376 3.69e+00 1ou0A 207 3.81e+00 1l0qA 391 4.89e+00 b.1.3.1 77644 b.69.2.3 77645 1eiwA 111 5.92e+00 1eiwA c.23.3.1 31130 1es9A 232 5.94e+00 1wab c.23.10.3 31340 1f6dA 376 6.28e+00 1f6dA c.87.1.3 35467 1p5jA 372 6.38e+00 1aoqA 567 7.50e+00 1qksA a.3.1.2 15934 b.70.2.1 27692 1vgvA 384 7.65e+00 1rcuA 195 7.82e+00 1aomA 567 8.73e+00 1qksA b.70.2.1 27694 1j9lA 247 8.74e+00 c.106.1.1 62762 1wab 232 9.40e+00 1wab c.23.10.3 31341 1qksA 567 9.45e+00 1qksA a.3.1.2 15951 b.70.2.1 27710 1gthD 1025 1.06e+01 a.1.2.2 70498 c.1.4.1 70499 c.3.1.1 70500 c.4.1.1 70501 d.58.1.5 70502 1n7zA 334 1.07e+01 b.127.1.1 85380 1eokA 290 1.15e+01 1eokA c.1.8.5 28991 1l3iA 192 1.18e+01 c.66.1.22 77676 1sr9A 644 1.27e+01 1pswA 348 1.29e+01 c.87.1.7 88287 1vddA 228 1.45e+01 1f2vA 219 1.46e+01 1f2vA c.23.17.1 59627 1cknA 330 1.52e+01 1ckmA b.40.4.6 25360 d.142.2.3 41587 1o9wA 177 1.58e+01 b.2.3.5 86713 2cuaA 135 1.65e+01 2cuaA b.6.1.2 23039 1j9jA 247 1.66e+01 c.106.1.1 62758 1gt8A 1025 1.72e+01 a.1.2.2 70418 c.1.4.1 70419 c.3.1.1 70420 c.4.1.1 70421 d.58.1.5 70422 1gt8B 1025 1.72e+01 a.1.2.2 70423 c.1.4.1 70424 c.3.1.1 70425 c.4.1.1 70426 d.58.1.5 70427 1m3iA 471 1.74e+01 1gthB 1025 1.75e+01 a.1.2.2 70488 c.1.4.1 70489 c.3.1.1 70490 c.4.1.1 70491 d.58.1.5 70492 1ckmA 330 1.77e+01 1ckmA b.40.4.6 25358 d.142.2.3 41585 1mjfA 281 1.88e+01 c.66.1.17 79198 1pmi 440 1.89e+01 1pmi b.82.1.3 28114 1h7wD 1025 1.89e+01 a.1.2.2 15686 c.1.4.1 28631 c.3.1.1 30327 c.4.1.1 30612 d.58.1.5 39010 1h7xD 1025 1.94e+01 a.1.2.2 15690 c.1.4.1 28635 c.3.1.1 30331 c.4.1.1 30616 d.58.1.5 39014 1gteA 1025 1.95e+01 a.1.2.2 70440 c.1.4.1 70441 c.3.1.1 70442 c.4.1.1 70443 d.58.1.5 70444 1h7wA 1025 1.98e+01 1h7wA a.1.2.2 15683 c.1.4.1 28628 c.3.1.1 30324 c.4.1.1 30609 d.58.1.5 39007 1h7wB 1025 1.98e+01 a.1.2.2 15684 c.1.4.1 28629 c.3.1.1 30325 c.4.1.1 30610 d.58.1.5 39008 1kr5A 226 1.99e+01 c.66.1.7 68847 1gthC 1025 2.03e+01 a.1.2.2 70493 c.1.4.1 70494 c.3.1.1 70495 c.4.1.1 70496 d.58.1.5 70497 1gthA 1025 2.03e+01 a.1.2.2 70483 c.1.4.1 70484 c.3.1.1 70485 c.4.1.1 70486 d.58.1.5 70487 1h7xB 1025 2.04e+01 a.1.2.2 15688 c.1.4.1 28633 c.3.1.1 30329 c.4.1.1 30614 d.58.1.5 39012 1h7xA 1025 2.04e+01 1h7wA a.1.2.2 15687 c.1.4.1 28632 c.3.1.1 30328 c.4.1.1 30613 d.58.1.5 39011 1i1nA 226 2.06e+01 c.66.1.7 71102 1h7xC 1025 2.12e+01 a.1.2.2 15689 c.1.4.1 28634 c.3.1.1 30330 c.4.1.1 30615 d.58.1.5 39013 1a3qA 285 2.15e+01 1a3qA b.1.18.1 21932 b.2.5.3 22447 1oz7A 131 2.28e+01 1ju2A 536 2.30e+01 c.3.1.2 77169 d.16.1.1 77170 1ul7A 102 2.32e+01 1ehkB 168 2.38e+01 2cuaA b.6.1.2 23041 f.17.2.1 43625 1gteD 1025 2.44e+01 a.1.2.2 70455 c.1.4.1 70456 c.3.1.1 70457 c.4.1.1 70458 d.58.1.5 70459 1cf3A 583 2.66e+01 1gpeA c.3.1.2 30385 d.16.1.1 37949 1jnrA 643 2.67e+01 a.7.3.1 66966 c.3.1.4 66967 d.168.1.1 66968 1nzhA 282 2.73e+01 1r9gA 216 2.75e+01 1kzhA 555 2.81e+01 c.89.1.1 73361 2pcfB 250 2.82e+01 1hcz i.4.1.1 45911 3pga1 337 2.83e+01 4pgaA 1g01A 364 2.85e+01 7a3hA c.1.8.3 60161 1gal 583 2.87e+01 1gpeA c.3.1.2 30386 d.16.1.1 37950 1tdj 514 2.94e+01 1tdj c.79.1.1 35297 d.58.18.2 39356 d.58.18.2 39357 1mtnC 97 2.95e+01 5ptp 4pgaA 337 2.98e+01 4pgaA c.88.1.1 35565 1ab9C 97 3.12e+01 5ptp 1gg6C 97 3.12e+01 5ptp 1m3jA 471 3.14e+01 1jhdA 396 3.36e+01 b.122.1.3 66712 c.26.1.5 66713 1vjuA 309 3.43e+01 1nnsA 326 3.44e+01 c.88.1.1 85910 1gp1A 198 3.70e+01 1gp1A c.47.1.10 33059 1ntfA 282 3.90e+01