# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
2pfkA	320	1.06e-01	3pfk	c.89.1.1	35577
1pfkA	320	1.14e-01	3pfk	c.89.1.1	35575
6pfkA	319	1.99e-01	3pfk	c.89.1.1	35583
1j0aA	325	3.90e-01		c.79.1.1	83871
3pfk	319	5.03e-01	3pfk	c.89.1.1	35581
4pfk	319	5.96e-01	3pfk	c.89.1.1	35582
1v4vA	376	1.19e+00			
1f6dA	376	2.07e+00	1f6dA	c.87.1.3	35467
1trb	320	2.15e+00	1trb	c.3.1.5	30529
				c.3.1.5	30530
1vgvA	384	2.69e+00			
1rcuA	195	2.78e+00			
1qopB	396	3.35e+00	2tysB	c.79.1.1	35270
2tysB	397	3.37e+00	2tysB	c.79.1.1	35272
1k8yB	396	3.38e+00		c.79.1.1	72184
1bksB	397	3.53e+00	2tysB	c.79.1.1	35285
1ou0A	207	4.12e+00			
2wsyB	396	4.69e+00	2tysB	c.79.1.1	35288
1pwhA	327	5.94e+00			
1uirA	314	7.03e+00			
1inlA	296	1.18e+01		c.66.1.17	66220
1n82A	331	1.23e+01			
1jq3A	296	1.32e+01		c.66.1.17	67079
1l0qA	391	1.44e+01		b.1.3.1	77644
				b.69.2.3	77645
1sr9A	644	1.46e+01			
1p5jA	372	1.47e+01			
1eiwA	111	1.84e+01	1eiwA	c.23.3.1	31130
1kr5A	226	1.86e+01		c.66.1.7	68847
1l3iA	192	2.02e+01		c.66.1.22	77676
1ur1A	378	2.12e+01			
1g01A	364	2.28e+01	7a3hA	c.1.8.3	60161
1i1nA	226	2.30e+01		c.66.1.7	71102
1vddA	228	2.38e+01			
1wab	232	2.43e+01	1wab	c.23.10.3	31341
1es9A	232	2.44e+01	1wab	c.23.10.3	31340
1j9jA	247	2.55e+01		c.106.1.1	62758
1j9lA	247	2.58e+01		c.106.1.1	62762
1i1hA	219	2.63e+01	1f2vA	c.23.17.1	61530
1gq6A	313	2.88e+01		c.42.1.1	70341
1qxrA	189	2.92e+01			
1nvpD	108	2.95e+01			
1jnrA	643	3.14e+01		a.7.3.1	66966
				c.3.1.4	66967
				d.168.1.1	66968
1nzhA	282	3.45e+01			
1aomA	567	3.50e+01	1qksA	b.70.2.1	27694
1aoqA	567	3.50e+01	1qksA	a.3.1.2	15934
				b.70.2.1	27692
1plzA	189	3.54e+01		b.82.1.7	88160
1kzhA	555	3.67e+01		c.89.1.1	73361
1f2vA	219	3.73e+01	1f2vA	c.23.17.1	59627
1ig3A	263	3.81e+01	1ig3A	b.82.6.1	62358
				c.100.1.1	62359
1pswA	348	3.94e+01		c.87.1.7	88287
1gu3A	149	3.99e+01		b.18.1.14	76350
1mjfA	281	3.99e+01		c.66.1.17	79198