# List of top-scoring protein chains for T0202.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o8oA 167 4.23e-01 1kzhA 555 5.03e-01 c.89.1.1 73361 1qhoA 686 6.42e-01 1cxlA b.1.18.2 21844 b.3.1.1 22513 b.71.1.1 27751 c.1.8.1 28738 1mtoA 319 1.14e+00 c.89.1.1 79458 6pfkA 319 1.26e+00 3pfk c.89.1.1 35583 1g62A 224 2.06e+00 1g61A d.126.1.1 41128 4pfk 319 2.09e+00 3pfk c.89.1.1 35582 1jztA 246 2.24e+00 c.104.1.1 63319 1pwhA 327 3.25e+00 1pfkA 320 3.34e+00 3pfk c.89.1.1 35575 2pfkC 320 3.36e+00 3pfk c.89.1.1 35579 1kfiA 572 4.21e+00 c.84.1.1 68555 c.84.1.1 68556 c.84.1.1 68557 d.129.2.1 68558 1o1zA 234 5.40e+00 c.1.18.3 86555 1m0sA 219 6.00e+00 c.35.1.2 78351 d.58.40.1 78352 1dw0A 112 8.19e+00 1dw0A a.3.1.1 15911 1ciu 683 8.30e+00 1cxlA b.1.18.2 21852 b.3.1.1 22521 b.71.1.1 27759 c.1.8.1 28746 1e9oA 152 8.80e+00 1mfmA b.1.8.1 22227 1e9qA 151 9.02e+00 1mfmA b.1.8.1 22217 1l3wA 546 9.14e+00 b.1.6.1 73553 b.1.6.1 73554 b.1.6.1 73555 b.1.6.1 73556 b.1.6.1 73557 1q0eA 152 9.76e+00 1e9pB 151 9.80e+00 1mfmA b.1.8.1 22216 1e9pA 151 1.02e+01 1mfmA b.1.8.1 22215 1tie 172 1.03e+01 1wba b.42.4.1 25592 1cbjA 151 1.04e+01 1mfmA b.1.8.1 22213 1e9oB 152 1.05e+01 1mfmA b.1.8.1 22228 1o8qA 167 1.07e+01 c.57.1.1 86669 3sodB 152 1.07e+01 1e9qB 151 1.08e+01 1mfmA b.1.8.1 22218 1eavA 162 1.08e+01 c.57.1.1 64877 1cb4A 151 1.11e+01 1mfmA b.1.8.1 22236 1ps9A 671 1.37e+01 1o0xA 262 1.40e+01 d.127.1.1 80755 6cgt 684 1.41e+01 1cxlA b.1.18.2 21837 b.3.1.1 22506 b.71.1.1 27744 c.1.8.1 28731 8cgtA 684 1.42e+01 1cxlA b.1.18.2 21831 b.3.1.1 22500 b.71.1.1 27738 c.1.8.1 28725 1cgt 684 1.42e+01 1cxlA b.1.18.2 21815 b.3.1.1 22484 b.71.1.1 27722 c.1.8.1 28709 1o8nA 167 1.42e+01 c.57.1.1 86665 1lkdA 297 1.43e+01 d.32.1.3 78059 d.32.1.3 78060 5cgt 684 1.43e+01 1cxlA b.1.18.2 21824 b.3.1.1 22493 b.71.1.1 27731 c.1.8.1 28718 4cgt 678 1.44e+01 1cxlA b.1.18.2 21825 b.3.1.1 22494 b.71.1.1 27732 c.1.8.1 28719 1qdlB 195 1.44e+01 1qdlB c.23.16.1 31437 1dfoA 417 1.46e+01 1bj4A c.67.1.4 34480 1pcqO 97 1.49e+01 1eqbA 417 1.51e+01 1bj4A c.67.1.4 34484 1gq6A 313 1.52e+01 c.42.1.1 70341 1o6uA 403 1.53e+01 1udxA 416 1.63e+01 3pmgA 561 1.69e+01 3pmgA c.84.1.1 35408 c.84.1.1 35409 c.84.1.1 35410 d.129.2.1 41301 1b16A 254 1.79e+01 1b16A c.2.1.2 29875 1dquA 538 1.92e+01 1dquA c.1.12.7 29314 1s1iC 386 2.05e+01 1qnrA 344 2.05e+01 1qnoA c.1.8.3 28834 1pklA 499 2.06e+01 1a49A b.58.1.1 27052 c.1.12.1 29280 c.49.1.1 33134 1rleA 692 2.07e+01 1vjjA 692 2.07e+01 1rliA 184 2.13e+01 1pxtA 390 2.26e+01 1afwA c.95.1.1 35904 c.95.1.1 35905 1afwA 393 2.29e+01 1afwA c.95.1.1 35900 c.95.1.1 35901 1o6dA 163 2.34e+01 1f6mA 320 2.57e+01 1trb c.3.1.5 30537 c.3.1.5 30538 1tde 316 2.68e+01 1trb c.3.1.5 30531 c.3.1.5 30532 1jl3A 139 2.78e+01 c.44.1.1 66826 1cl0A 320 2.79e+01 1trb c.3.1.5 30535 c.3.1.5 30536 1uxmA 153 2.81e+01 1m4yA 171 2.85e+01 d.153.1.4 84802 1jo0A 98 2.96e+01 d.68.4.1 77140 2jdxA 385 2.99e+01 1jdw d.126.1.2 41139 1tdf 316 3.02e+01 1trb c.3.1.5 30533 c.3.1.5 30534 1a04A 215 3.04e+01 1a04A a.4.6.2 16234 c.23.1.1 31089 1trb 320 3.15e+01 1trb c.3.1.5 30529 c.3.1.5 30530 1j0aA 325 3.20e+01 c.79.1.1 83871 1dkgD 383 3.23e+01 1ba1 c.55.1.1 33427 c.55.1.1 33428 1mfmA 153 3.27e+01 1mfmA b.1.8.1 22246 1dswA 153 3.30e+01 1mfmA b.1.8.1 22271 1h4vB 421 3.32e+01 1adjA c.51.1.1 60624 d.104.1.1 60625 1kyaA 499 3.37e+01 b.6.1.3 73203 b.6.1.3 73204 b.6.1.3 73205 8jdwA 386 3.41e+01 1jdw d.126.1.2 41132 1q6oA 216 3.42e+01 1p5jA 372 3.49e+01 1su4A 994 3.51e+01 1v4vA 376 3.53e+01 3kvt 115 3.53e+01 1t1dA d.42.1.2 38642 1o5iA 249 3.69e+01 1hl4A 154 3.87e+01 b.1.8.1 83587 1idjA 359 3.89e+01 1qcxA b.80.1.2 28026