# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1ju2A	536	5.59e-01		c.3.1.2	77169
				d.16.1.1	77170
2pfkA	320	7.27e-01	3pfk	c.89.1.1	35577
1jztA	246	2.24e+00		c.104.1.1	63319
4pfk	319	3.56e+00	3pfk	c.89.1.1	35582
1f3lA	321	4.17e+00	1g6q2	c.66.1.6	59630
1pwhA	327	8.02e+00			
1jnyA	435	8.08e+00		b.43.3.1	66982
				b.44.1.1	66983
				c.37.1.8	66984
3pmgA	561	8.21e+00	3pmgA	c.84.1.1	35408
				c.84.1.1	35409
				c.84.1.1	35410
				d.129.2.1	41301
1chuA	540	8.49e+00	1chuA	a.7.3.1	16325
				c.3.1.4	30424
				d.168.1.1	42307
1r9gA	216	9.13e+00			
1i7qB	193	9.71e+00	1qdlB	c.23.16.1	61902
1k1xA	659	9.74e+00		a.8.3.2	84279
				b.30.5.8	84280
				c.6.2.2	84281
1gt91	357	9.84e+00			
1f60A	458	1.01e+01	1efcA	b.43.3.1	25705
				b.44.1.1	25745
				c.37.1.8	32140
1ga6A	372	1.05e+01	1ga1A	c.41.1.2	32556
1eiwA	111	1.09e+01	1eiwA	c.23.3.1	31130
1j0aA	325	1.32e+01		c.79.1.1	83871
1es9A	232	1.66e+01	1wab	c.23.10.3	31340
1p5jA	372	1.92e+01			
1qopB	396	1.93e+01	2tysB	c.79.1.1	35270
1brwA	433	2.09e+01	1brwA	a.46.2.1	17764
				c.27.1.1	31628
				d.41.3.1	38626
1i1qB	192	2.21e+01	1qdlB	c.23.16.1	61544
1trb	320	2.22e+01	1trb	c.3.1.5	30529
				c.3.1.5	30530
1wab	232	2.27e+01	1wab	c.23.10.3	31341
1qhoA	686	2.36e+01	1cxlA	b.1.18.2	21844
				b.3.1.1	22513
				b.71.1.1	27751
				c.1.8.1	28738
1bag	425	2.42e+01	1bag	b.71.1.1	27720
				c.1.8.1	28707
1reoA	486	2.49e+01			
1v4vA	376	2.59e+01			
1p77A	272	2.67e+01			
1e2tA	284	2.68e+01	1e2tA	d.3.1.5	37121
1f2vA	219	2.70e+01	1f2vA	c.23.17.1	59627
2cuaA	135	2.76e+01	2cuaA	b.6.1.2	23039
1pamA	686	2.85e+01	1cxlA	b.1.18.2	21846
				b.3.1.1	22515
				b.71.1.1	27753
				c.1.8.1	28740
1g97A	459	2.90e+01	1fwyA	b.81.1.4	60394
				c.68.1.5	60395
1uhvA	500	2.96e+01			
1q1rA	431	3.06e+01			
1ng4A	390	3.08e+01		c.3.1.2	85666
				d.16.1.3	85667
1nofA	383	3.21e+01			
1ou0A	207	3.26e+01			
1ew0A	130	3.35e+01	1drmA	d.110.3.2	40905
1afwA	393	3.35e+01	1afwA	c.95.1.1	35900
				c.95.1.1	35901
1ojaA	520	3.64e+01			
1pj5A	830	3.66e+01			
1s3eA	520	3.73e+01			
1m0wA	491	3.81e+01		c.30.1.4	78363
				d.142.1.6	78364
1kdgA	546	3.88e+01		c.3.1.2	77337
				d.16.1.1	77338
1l3iA	192	3.92e+01		c.66.1.22	77676
1cb8A	678	3.95e+01	1cb8A	a.102.3.2	18849
				b.24.1.1	23898
				b.30.5.2	24422