# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2pfkA 320 2.59e-01 3pfk c.89.1.1 35577 4pfk 319 1.90e+00 3pfk c.89.1.1 35582 1jztA 246 2.12e+00 c.104.1.1 63319 1g97A 459 2.28e+00 1fwyA b.81.1.4 60394 c.68.1.5 60395 1qhoA 686 2.29e+00 1cxlA b.1.18.2 21844 b.3.1.1 22513 b.71.1.1 27751 c.1.8.1 28738 1ju2A 536 2.57e+00 c.3.1.2 77169 d.16.1.1 77170 1hm9A 468 3.37e+00 b.81.1.4 65866 c.68.1.5 65867 1k1xA 659 5.55e+00 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1hv9A 456 5.91e+00 1fwyA b.81.1.4 28060 c.68.1.5 34518 1j0aA 325 6.12e+00 c.79.1.1 83871 3pmgA 561 6.45e+00 3pmgA c.84.1.1 35408 c.84.1.1 35409 c.84.1.1 35410 d.129.2.1 41301 1f3lA 321 6.77e+00 1g6q2 c.66.1.6 59630 1jnyA 435 7.24e+00 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1qopB 396 7.68e+00 2tysB c.79.1.1 35270 1pwhA 327 8.34e+00 1ou0A 207 9.18e+00 1rcuA 195 9.68e+00 1v4vA 376 1.18e+01 1kdgA 546 1.19e+01 c.3.1.2 77337 d.16.1.1 77338 1gt91 357 1.20e+01 1jrrA 382 1.27e+01 e.1.1.1 63256 1eiwA 111 1.42e+01 1eiwA c.23.3.1 31130 1o6uA 403 1.47e+01 1i7qB 193 1.52e+01 1qdlB c.23.16.1 61902 1p5jA 372 1.61e+01 1gu3A 149 1.68e+01 b.18.1.14 76350 1nofA 383 1.69e+01 1wab 232 1.81e+01 1wab c.23.10.3 31341 1es9A 232 1.83e+01 1wab c.23.10.3 31340 1brwA 433 1.83e+01 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1ga6A 372 2.01e+01 1ga1A c.41.1.2 32556 1ojaA 520 2.02e+01 1gal 583 2.17e+01 1gpeA c.3.1.2 30386 d.16.1.1 37950 1trb 320 2.21e+01 1trb c.3.1.5 30529 c.3.1.5 30530 1f6dA 376 2.39e+01 1f6dA c.87.1.3 35467 1s3eA 520 2.40e+01 1cvrA 435 2.41e+01 1cvrA b.1.18.12 21949 c.17.1.2 31006 1uhvA 500 2.50e+01 1chuA 540 2.52e+01 1chuA a.7.3.1 16325 c.3.1.4 30424 d.168.1.1 42307 1ps9A 671 2.53e+01 1a12A 413 2.80e+01 1a12A b.69.5.1 27663 1afwA 393 2.99e+01 1afwA c.95.1.1 35900 c.95.1.1 35901 1gsoA 431 3.20e+01 1gsoA b.84.2.1 28240 c.30.1.1 31647 d.142.1.2 41492 1pamA 686 3.37e+01 1cxlA b.1.18.2 21846 b.3.1.1 22515 b.71.1.1 27753 c.1.8.1 28740 1iy8A 267 3.43e+01 c.2.1.2 83774 1bag 425 3.45e+01 1bag b.71.1.1 27720 c.1.8.1 28707 1ii7A 333 3.49e+01 1ii7A d.159.1.4 62415 1qxrA 189 3.52e+01 1plzA 189 3.54e+01 b.82.1.7 88160 1i24A 404 3.71e+01 c.2.1.2 83663 1qrrA 394 3.81e+01 1qrrA c.2.1.2 29824 1jae 471 3.89e+01 1smd b.71.1.1 27773 c.1.8.1 28760 1f60A 458 3.90e+01 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 2aaa 484 3.92e+01 7taa b.71.1.1 27777 c.1.8.1 28764 1gq6A 313 3.93e+01 c.42.1.1 70341 1bu8A 452 3.94e+01 1gpl b.12.1.2 23647 c.69.1.19 34795 1ooeA 236 3.99e+01 c.2.1.2 87196