# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ju2A 536 8.10e-02 c.3.1.2 77169 d.16.1.1 77170 2pfkA 320 3.52e-01 3pfk c.89.1.1 35577 1jztA 246 1.00e+00 c.104.1.1 63319 1qhoA 686 1.14e+00 1cxlA b.1.18.2 21844 b.3.1.1 22513 b.71.1.1 27751 c.1.8.1 28738 4pfk 319 1.26e+00 3pfk c.89.1.1 35582 1j0aA 325 1.79e+00 c.79.1.1 83871 1chuA 540 2.40e+00 1chuA a.7.3.1 16325 c.3.1.4 30424 d.168.1.1 42307 1qopB 396 3.30e+00 2tysB c.79.1.1 35270 1pswA 348 3.47e+00 c.87.1.7 88287 1trb 320 3.82e+00 1trb c.3.1.5 30529 c.3.1.5 30530 1jnyA 435 4.44e+00 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1i7qB 193 5.00e+00 1qdlB c.23.16.1 61902 1ga6A 372 5.26e+00 1ga1A c.41.1.2 32556 1pwhA 327 5.30e+00 1f3lA 321 5.79e+00 1g6q2 c.66.1.6 59630 1afwA 393 5.82e+00 1afwA c.95.1.1 35900 c.95.1.1 35901 1eiwA 111 7.08e+00 1eiwA c.23.3.1 31130 1vddA 228 7.11e+00 3pmgA 561 7.27e+00 3pmgA c.84.1.1 35408 c.84.1.1 35409 c.84.1.1 35410 d.129.2.1 41301 1v4vA 376 7.94e+00 1p5jA 372 8.12e+00 1es9A 232 9.08e+00 1wab c.23.10.3 31340 1wab 232 9.66e+00 1wab c.23.10.3 31341 1r9gA 216 9.85e+00 1brwA 433 1.02e+01 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1g97A 459 1.02e+01 1fwyA b.81.1.4 60394 c.68.1.5 60395 1gt91 357 1.04e+01 1uhvA 500 1.11e+01 1nzhA 282 1.12e+01 1eokA 290 1.21e+01 1eokA c.1.8.5 28991 1ri6A 343 1.31e+01 1ou0A 207 1.35e+01 1k1xA 659 1.45e+01 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1rcuA 195 1.47e+01 1f6dA 376 1.54e+01 1f6dA c.87.1.3 35467 1gqeA 365 1.61e+01 e.38.1.1 70351 1d2eA 397 1.66e+01 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1fl2A 310 1.71e+01 1hyuA c.3.1.5 59869 c.3.1.5 59870 2cuaA 135 1.72e+01 2cuaA b.6.1.2 23039 1hm9A 468 1.80e+01 b.81.1.4 65866 c.68.1.5 65867 1hyeA 313 1.81e+01 2cmd c.2.1.5 61400 d.162.1.1 61401 1bag 425 1.82e+01 1bag b.71.1.1 27720 c.1.8.1 28707 1a12A 413 1.84e+01 1a12A b.69.5.1 27663 1ju3A 583 1.87e+01 b.18.1.13 67300 c.69.1.21 67301 1jl3A 139 1.92e+01 c.44.1.1 66826 1ojaA 520 1.96e+01 1nofA 383 2.04e+01 1g291 372 2.07e+01 1g291 1o0wA 252 2.21e+01 a.149.1.1 80751 d.50.1.1 80752 1f60A 458 2.22e+01 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1ps9A 671 2.24e+01 1s0uA 408 2.32e+01 1poxA 585 2.33e+01 1poxA c.31.1.3 31731 c.36.1.5 31793 c.36.1.9 31794 1kdgA 546 2.36e+01 c.3.1.2 77337 d.16.1.1 77338 1ivnA 190 2.46e+01 c.23.10.5 83719 1jae 471 2.47e+01 1smd b.71.1.1 27773 c.1.8.1 28760 1s3eA 520 2.52e+01 1ha3A 405 2.53e+01 1efcA b.43.3.1 60869 b.44.1.1 60870 c.37.1.8 60871 3il8 72 2.63e+01 1tvxA d.9.1.1 37356 1g0cA 364 2.63e+01 7a3hA c.1.8.3 60165 1e2tA 284 2.69e+01 1e2tA d.3.1.5 37121 1lwjA 441 2.70e+01 b.71.1.1 74303 c.1.8.1 74304 1o1yA 239 2.70e+01 c.23.16.1 86554 1kgsA 225 2.82e+01 a.4.6.1 68596 c.23.1.1 68597 1i24A 404 3.06e+01 c.2.1.2 83663 2eifA 136 3.10e+01 1bkb b.34.5.2 24607 b.40.4.5 25339 1qrrA 394 3.14e+01 1qrrA c.2.1.2 29824 1t82A 155 3.16e+01 1m2dA 110 3.19e+01 c.47.1.11 78476 1fqtA 112 3.32e+01 1fqtA b.33.1.1 24441 1n82A 331 3.34e+01 6ldh 330 3.36e+01 3ldh c.2.1.5 30161 d.162.1.1 42128 1i1qB 192 3.36e+01 1qdlB c.23.16.1 61544 1ktbA 405 3.39e+01 b.71.1.1 72960 c.1.8.1 72961 1cb8A 678 3.39e+01 1cb8A a.102.3.2 18849 b.24.1.1 23898 b.30.5.2 24422 1ooeA 236 3.40e+01 c.2.1.2 87196 1gy8A 397 3.44e+01 c.2.1.2 83376 1dfoA 417 3.47e+01 1bj4A c.67.1.4 34480 1dg6A 191 3.73e+01 1d4vB b.22.1.1 23883 1dqwA 267 3.83e+01 1dqwA c.1.2.3 28551 1q7fA 286 3.89e+01