# List of top-scoring protein chains for t04-100-30-bys hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2pfkA 320 2.79e-03 3pfk c.89.1.1 35577 4pfk 319 3.44e-02 3pfk c.89.1.1 35582 1rcuA 195 1.39e-01 unknown_sccs -7279 1v4vA 376 5.71e-01 c.87.1.3 -8583 1j0aA 325 8.93e-01 c.79.1.1 83871 1f6dA 376 9.08e-01 1f6dA c.87.1.3 35467 1qhdA 398 1.37e+00 1qhdA a.115.1.2 63324 b.19.1.1 63325 1pswA 348 2.72e+00 c.87.1.7 88287 1t82A 155 4.51e+00 1bag 425 4.90e+00 1bag b.71.1.1 27720 c.1.8.1 28707 1eiwA 111 5.14e+00 1eiwA c.23.3.1 31130 1jl3A 139 5.34e+00 c.44.1.1 66826 1qopB 396 5.61e+00 2tysB c.79.1.1 35270 1oi7A 288 5.97e+00 c.2.1.8 87049 c.23.4.1 87050 1gt91 357 6.19e+00 1hm9A 468 6.27e+00 b.81.1.4 65866 c.68.1.5 65867 1a04A 215 6.66e+00 1a04A a.4.6.2 16234 c.23.1.1 31089 1dx5I 118 7.53e+00 1dx5I g.3.11.1 44302 g.3.11.1 44303 g.3.11.1 44304 1aqm 453 7.58e+00 1smd b.71.1.1 27717 c.1.8.1 28704 1rliA 184 7.61e+00 unknown_sccs -6438 1qhoA 686 7.91e+00 1cxlA b.1.18.2 21844 b.3.1.1 22513 b.71.1.1 27751 c.1.8.1 28738 1fyeA 229 8.03e+00 1fyeA c.23.16.4 31477 1jae 471 8.71e+00 1smd b.71.1.1 27773 c.1.8.1 28760 1mkaA 171 8.76e+00 1mkaA d.38.1.2 38543 1g94A 448 8.79e+00 b.71.1.1 65169 c.1.8.1 65170 1kq3A 376 9.03e+00 e.22.1.2 68790 1l3iA 192 9.11e+00 c.66.1.22 77676 1m2dA 110 9.48e+00 c.47.1.11 78476 1afwA 393 9.57e+00 1afwA c.95.1.1 35900 c.95.1.1 35901 1g97A 459 9.69e+00 1fwyA b.81.1.4 60394 c.68.1.5 60395 1idk 359 1.06e+01 1qcxA b.80.1.2 28025 3il8 72 1.09e+01 1tvxA d.9.1.1 37356 1avk 638 1.11e+01 1a2vA b.30.2.1 24410 d.17.2.1 38047 d.17.2.1 38048 1iqyA 638 1.14e+01 b.30.2.1 76763 d.17.2.1 76764 d.17.2.1 76765 1es9A 232 1.15e+01 1wab c.23.10.3 31340 1php 394 1.19e+01 16pk c.86.1.1 35452 1jztA 246 1.20e+01 c.104.1.1 63319 1sdjA 310 1.22e+01 d.21.1.2 -9420 d.21.1.2 -9421 1qrrA 394 1.22e+01 1qrrA c.2.1.2 29824 1ji0A 240 1.23e+01 c.37.1.12 71665 2pth 193 1.24e+01 2pth c.56.3.1 33793 1khdA 345 1.30e+01 a.46.2.1 77400 c.27.1.1 77401 1sfp 114 1.34e+01 1sfp b.23.1.1 23895 1o6dA 163 1.38e+01 c.116.1.3 -6689 1iz5A 249 1.38e+01 d.131.1.2 83834 d.131.1.2 83835 1i24A 404 1.40e+01 c.2.1.2 83663 1eexA 554 1.41e+01 1dioA c.1.19.3 29650 1ui7A 638 1.44e+01 b.30.2.1 -3523 d.17.2.1 -9268 d.17.2.1 -9269 1o5iA 249 1.47e+01 c.2.1.2 -5833 1wab 232 1.50e+01 1wab c.23.10.3 31341 1ivnA 190 1.51e+01 c.23.10.5 83719 1thjA 214 1.59e+01 1qreA b.81.1.5 28072 1poxA 585 1.68e+01 1poxA c.31.1.3 31731 c.36.1.5 31793 c.36.1.9 31794 1iz6A 138 1.71e+01 b.34.5.2 76976 b.40.4.5 76977 1ui8A 638 1.72e+01 b.30.2.1 -3525 d.17.2.1 -9272 d.17.2.1 -9273 1ps9A 671 1.72e+01 c.1.4.1 -5206 1frb 315 1.72e+01 1frb c.1.7.1 28665 1lt8A 406 1.73e+01 c.1.26.1 78186 1hv9A 456 1.74e+01 1fwyA b.81.1.4 28060 c.68.1.5 34518 1o0wA 252 1.74e+01 a.149.1.1 80751 d.50.1.1 80752 1gtkA 313 1.78e+01 c.94.1.1 76346 d.50.2.1 76347 1o8bA 219 1.91e+01 unknown_sccs 81180 d.58.40.1 81181 1j1iA 296 1.93e+01 c.69.1.10 83977 1qwrA 319 1.93e+01 b.82.1.3 -4880 1o1zA 234 1.95e+01 c.1.18.3 86555 1ddjA 247 1.95e+01 5ptp b.47.1.2 26362 1pkp 150 1.97e+01 1pkp d.14.1.1 37551 d.50.1.2 38787 1s6yA 450 1.99e+01 1gsoA 431 2.01e+01 1gsoA b.84.2.1 28240 c.30.1.1 31647 d.142.1.2 41492 1fs5A 266 2.01e+01 unknown_sccs 65044 1t62A 166 2.01e+01 1gs5A 258 2.04e+01 c.73.1.2 70395 1ou0A 207 2.06e+01 c.23.17.1 -6498 1qw2A 102 2.12e+01 unknown_sccs -9601 1g24A 211 2.22e+01 1g24A d.166.1.1 42270 1i7qB 193 2.24e+01 1qdlB c.23.16.1 61902 1s5aA 150 2.26e+01 unknown_sccs -9300 3pmgA 561 2.28e+01 3pmgA c.84.1.1 35408 c.84.1.1 35409 c.84.1.1 35410 d.129.2.1 41301 1f37A 110 2.29e+01 1f37A c.47.1.11 33088 1lk5A 229 2.32e+01 unknown_sccs 73960 d.58.40.1 73961 1brwA 433 2.34e+01 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1ew0A 130 2.34e+01 1drmA d.110.3.2 40905 1kk1A 410 2.34e+01 b.43.3.1 72634 b.44.1.1 72635 c.37.1.8 72636 1j1yA 136 2.37e+01 d.38.1.5 -9671 1ftkA 279 2.39e+01 1gr2A c.94.1.1 35819 1i1kA 309 2.40e+01 1daaA e.17.1.1 61533 1dcfA 136 2.40e+01 1dcfA c.23.1.2 31124 1kdgA 546 2.41e+01 c.3.1.2 77337 d.16.1.1 77338 1g291 372 2.43e+01 1g291 1dqwA 267 2.43e+01 1dqwA c.1.2.3 28551 1gp1A 198 2.43e+01 1gp1A c.47.1.10 33059 1mqiA 263 2.45e+01 c.94.1.1 -8681 1iyeA 309 2.48e+01 e.17.1.1 83786 1pda 315 2.53e+01 1pda c.94.1.1 35751 d.50.2.1 38794 1mvoA 136 2.56e+01 c.23.1.1 79513 1uhvA 500 2.56e+01 b.71.1.2 -4683 c.1.8.3 -5354 1dgwA 178 2.60e+01 1dgwA b.82.1.2 28090 1bec 238 2.60e+01 1bec b.1.1.1 20627 b.1.1.2 21561 1nc5A 373 2.61e+01 a.102.1.6 85548 1lqvA 193 2.61e+01 d.19.1.1 74206 1ktjA 129 2.62e+01 b.1.18.7 72974 1uqxA 113 2.62e+01 b.115.1.1 -3230 1ei9A 279 2.70e+01 1ei9A c.69.1.13 34713 1kkeA 210 2.75e+01 b.21.1.2 68669 b.83.1.2 68670 1l0sA 90 2.91e+01 b.81.2.1 73408 1ujnA 348 2.95e+01 e.22.1.1 -11998 1cuk 203 3.01e+01 1hjp a.5.1.1 16273 a.60.2.1 17946 b.40.4.2 25265 1qreA 247 3.04e+01 1qreA b.81.1.5 28066 1n0lA 224 3.14e+01 b.1.11.1 79744 b.7.2.1 79745 1trb 320 3.15e+01 1trb c.3.1.5 30529 c.3.1.5 30530 1ga6A 372 3.16e+01 1ga1A c.41.1.2 32556 1db3A 372 3.17e+01 1db3A c.2.1.2 29813 1kv8A 216 3.21e+01 c.1.2.3 73054 1o0xA 262 3.25e+01 d.127.1.1 80755 1pwhA 327 3.25e+01 c.79.1.1 -8524 1eokA 290 3.30e+01 1eokA c.1.8.5 28991 1jv1A 505 3.33e+01 c.68.1.5 71892 1vjeA 166 3.37e+01 d.185.1.2 -10261 1srrA 124 3.37e+01 1dz3A c.23.1.1 31110 1uirA 314 3.41e+01 c.66.1.17 -8114 1iirA 415 3.42e+01 1iirA c.87.1.5 62453 1kgnA 329 3.44e+01 a.25.1.2 68584 1nj4A 363 3.45e+01 b.105.1.1 80545 e.3.1.1 80546 1ooeA 236 3.46e+01 c.2.1.2 87196 1q16A 1247 3.47e+01 b.52.2.2 -4337 c.81.1.1 -8547 1j3kA 280 3.53e+01 c.71.1.1 84070 2cuaA 135 3.64e+01 2cuaA b.6.1.2 23039 1n2zA 245 3.68e+01 c.92.2.2 79865 1h3nA 878 3.75e+01 a.27.1.1 76641 b.51.1.1 76642 c.26.1.1 76643 1lv7A 257 3.75e+01 c.37.1.20 78232 1oq1A 223 3.85e+01 unknown_sccs -3455 1go7P 462 3.91e+01 unknown_sccs 76245 d.92.1.6 76246 1i1qB 192 3.96e+01 1qdlB c.23.16.1 61544 1dp0A 1023 3.98e+01 b.1.4.1 22073 b.1.4.1 22074 b.18.1.5 23722 b.30.5.1 24346 c.1.8.3 28845 1oz9A 150 3.99e+01 unknown_sccs -10588