# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2pfkA 320 5.99e-03 3pfk c.89.1.1 35577 4pfk 319 2.24e-02 3pfk c.89.1.1 35582 1jztA 246 3.58e-02 c.104.1.1 63319 1ju2A 536 2.04e-01 c.3.1.2 77169 d.16.1.1 77170 1kdgA 546 3.04e-01 c.3.1.2 77337 d.16.1.1 77338 1ri5A 298 1.08e+00 1pwhA 327 1.36e+00 1e39A 571 1.50e+00 1qjdA a.138.1.3 19694 c.3.1.4 30431 d.168.1.1 42314 1chuA 540 1.55e+00 1chuA a.7.3.1 16325 c.3.1.4 30424 d.168.1.1 42307 1gpeA 587 1.72e+00 1gpeA c.3.1.2 30387 d.16.1.1 37951 1q9iA 571 1.86e+00 1trb 320 2.16e+00 1trb c.3.1.5 30529 c.3.1.5 30530 1kssA 571 2.17e+00 a.138.1.3 72928 c.3.1.4 72929 d.168.1.1 72930 1rcuA 195 2.29e+00 1v8aA 265 2.35e+00 1qopB 396 2.54e+00 2tysB c.79.1.1 35270 1ou0A 207 2.76e+00 1k7hA 476 2.97e+00 c.76.1.1 72101 1dfoA 417 3.11e+00 1bj4A c.67.1.4 34480 1p5jA 372 3.21e+00 1bg4 302 3.27e+00 1taxA c.1.8.3 28806 1r5jA 337 3.33e+00 1n57A 291 3.99e+00 c.23.16.7 85328 1iy8A 267 4.71e+00 c.2.1.2 83774 1uirA 314 6.42e+00 1afwA 393 6.67e+00 1afwA c.95.1.1 35900 c.95.1.1 35901 1a49A 530 6.74e+00 1a49A b.58.1.1 27026 c.1.12.1 29255 c.49.1.1 33109 1o0uA 429 7.55e+00 c.118.1.1 80743 1fxmA 302 8.42e+00 1taxA 1i1wA 303 8.89e+00 c.1.8.3 76732 1kq3A 376 9.39e+00 e.22.1.2 68790 3grs 478 9.67e+00 3grs c.3.1.5 30441 c.3.1.5 30442 d.87.1.1 40152 1dozA 309 1.03e+01 1ak1 c.92.1.1 35592 1ojaA 520 1.04e+01 1xvaA 292 1.16e+01 1xvaA c.66.1.5 34183 1pn2A 280 1.20e+01 1s3eA 520 1.21e+01 1f2dA 341 1.22e+01 1f2dA c.79.1.1 35298 1gesA 450 1.27e+01 3grs c.3.1.5 30473 c.3.1.5 30474 d.87.1.1 40168 1a9xB 379 1.40e+01 1c3oB c.8.3.1 30732 c.23.16.1 31409 1g2iA 166 1.49e+01 1g2iA c.23.16.2 31438 1h4pA 408 1.53e+01 1h5qA 265 1.61e+01 1cydA c.2.1.2 60643 1d7uA 433 1.74e+01 2dkb c.67.1.4 34439 2dkb 433 1.99e+01 2dkb c.67.1.4 34438 1i1nA 226 2.01e+01 c.66.1.7 71102 1e6wA 260 2.05e+01 1e6wA c.2.1.2 59326 1kl1A 419 2.06e+01 c.67.1.4 72663 1ed8A 449 2.08e+01 1b8jA c.76.1.1 34988 1lfkA 398 2.16e+01 a.104.1.1 77926 1brt 277 2.18e+01 1brt c.69.1.12 34699 2pia 321 2.18e+01 2pia b.43.4.2 25663 c.25.1.2 31553 d.15.4.2 37704 1i7qB 193 2.27e+01 1qdlB c.23.16.1 61902 1h54A 754 2.31e+01 a.102.1.4 60634 b.30.5.3 60635 3ladA 476 2.39e+01 1lvl c.3.1.5 30573 c.3.1.5 30574 d.87.1.1 40208 1pbe 394 2.46e+01 1pbe c.3.1.2 30338 d.16.1.2 37869 3il8 72 2.52e+01 1tvxA d.9.1.1 37356 1ofuA 320 2.60e+01 c.32.1.1 86972 d.79.2.1 86973 1f6dA 376 2.68e+01 1f6dA c.87.1.3 35467 1k0iA 394 2.95e+01 c.3.1.2 67942 d.16.1.2 67943 1d4oA 184 2.98e+01 1d4oA c.31.1.4 31748 1ecfA 504 2.99e+01 1ecfB c.61.1.1 34053 d.153.1.1 41820 1n4wA 504 3.05e+01 1fsz 372 3.14e+01 1fsz c.32.1.1 31750 d.79.2.1 39802 1hdcA 253 3.19e+01 1e6wA c.2.1.2 29862 1pjcA 361 3.20e+01 1sayA c.2.1.4 30101 c.23.12.2 31361 6ldh 330 3.25e+01 3ldh c.2.1.5 30161 d.162.1.1 42128 1pda 315 3.28e+01 1pda c.94.1.1 35751 d.50.2.1 38794 1ukz 203 3.30e+01 1zin c.37.1.1 31840 1hc7A 477 3.34e+01 1hc7A c.51.1.1 60938 d.68.5.1 60940 d.104.1.1 60939 4pep 326 3.36e+01 1smrA b.50.1.2 26843 1m2dA 110 3.38e+01 c.47.1.11 78476 3cox 507 3.43e+01 1b8sA c.3.1.2 30332 d.16.1.1 37863 1v4vA 376 3.44e+01 1vdwA 254 3.51e+01 1q5qA 259 3.52e+01 1rliA 184 3.56e+01 1ps9A 671 3.59e+01 1vhqA 232 3.62e+01 1f2vA 219 3.68e+01 1f2vA c.23.17.1 59627 1adjA 421 3.82e+01 1adjA c.51.1.1 33188 d.104.1.1 40737 1ex1A 605 3.87e+01 1ex1A c.1.8.7 29013 c.23.11.1 31347 1ei9A 279 3.92e+01 1ei9A c.69.1.13 34713 1cjbA 231 3.94e+01 1qk3A c.61.1.1 34079 1gtkA 313 3.94e+01 c.94.1.1 76346 d.50.2.1 76347 1colA 204 3.98e+01 1a87 f.1.1.1 43378