Best Alignments for T0201

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
3fruA/T0201-3fruA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 3fruA/T0201-3fruA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 5.2150e+001.3308e+00 1agdA d.19.1.1
b.1.1.2
1kfuS/T0201-1kfuS-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1kfuS/T0201-1kfuS-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 5.2872e+003.3466e+00 a.39.1.8
1alvA/T0201-1alvA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1alvA/T0201-1alvA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 9.3988e+006.5734e+00 1alvA a.39.1.8
1bupA/T0201-1bupA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1bupA/T0201-1bupA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.0426e+016.0651e+00 1ba1 c.55.1.1
1qr2A/1d4aA-T0201-fssp-local-adpstyle5.a2m 1qr2A/1d4aA-T0201-fssp-local-adpstyle5.al 2.1970e+017.5112e+00 1d4aA c.23.5.3

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001