a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0201 1167B, Thermotoga maritima
- gi|15644206|ref|NP_229256.1|_1:94 hypothetical protein TM1457 [Thermotoga maritima MSB8]
- gi|7462465|pir||B72251 hypothetical protein - Thermotoga maritima (strain MSB8) [Taxonomy]
- gi|4982022|gb|AAD36525.1| hypothetical protein [Thermotoga maritima]

              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 MIKVTVTNSFFEVTGHAPDKTLCASVSLLTQHVANFLKAEKKAKIKKESGYLKVKFEELENCEVK
   2 MIKVTVTNSFFEVTGHAPDKTLCASVSLLTQHVANFLKAEKKAKIKKESGYLKVKFEELENCEVK


         70        80        90    
         |         |         |    
   1 VLAAMVRSLKELEQKFPSQIRVEVIDNGS
   2 VLAAMVRSLKELEQKFPSQIRVEVIDNGS