# List of top-scoring protein chains for T0201.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1n9lA 109 1.04e+00 d.110.3.6 85468 1kfuS 184 1.06e+00 a.39.1.8 68574 1alvA 173 1.76e+00 1alvA a.39.1.8 17370 1aj5A 173 4.08e+00 1alvA a.39.1.8 17367 1qr2A 230 4.65e+00 1d4aA c.23.5.3 31231 1dviA 184 5.16e+00 1alvA a.39.1.8 17365 1df0B 184 5.42e+00 1alvA a.39.1.8 17369 3bamA 213 5.51e+00 1bam c.52.1.3 33288 3fruA 269 5.62e+00 1agdA b.1.1.2 20657 d.19.1.1 38150 1dy6A 267 5.86e+00 1btl e.3.1.1 42732 1gpx 106 6.47e+00 1ayfA d.15.4.1 37681 1put 106 6.84e+00 1ayfA d.15.4.1 37680 1pdxA 106 6.95e+00 1ayfA d.15.4.1 37682 1oqqA 106 8.93e+00 1jvr 137 9.15e+00 1jvr a.61.1.2 18132 1r7sA 106 9.84e+00 1oqrA 106 9.85e+00 1aho 64 9.85e+00 1aho g.3.7.1 44127 1a5r 103 1.04e+01 1a5r d.15.1.1 37597 1f5nA 592 1.30e+01 1dg3A a.114.1.1 19077 c.37.1.8 32152 1lo5D 233 1.44e+01 b.40.2.2 78120 d.15.6.1 78121 1esfA 233 1.44e+01 3seb b.40.2.2 25146 d.15.6.1 37735 1i4gA 233 1.47e+01 3seb b.40.2.2 25148 d.15.6.1 37737 1dyqA 234 1.50e+01 3seb b.40.2.2 59140 d.15.6.1 59141 1j5uA 136 1.51e+01 d.208.1.1 71584 1fpn3 237 1.52e+01 1aym3 1op2A 234 1.69e+01 1op0A 234 1.74e+01 1uteA 313 1.74e+01 1uteA d.159.1.1 42078 1gd7A 109 1.76e+01 b.40.4.4 60441 1ltqA 301 1.77e+01 c.108.1.9 78208 c.37.1.1 78209 1i1nA 226 1.91e+01 c.66.1.7 71102 3tmkA 216 2.05e+01 3tmkA c.37.1.1 31920 1q7lA 198 2.13e+01 1o0yA 260 2.55e+01 c.1.10.1 80756 1sj1A 66 2.56e+01 1b5tA 275 2.63e+01 1b5tA c.1.23.1 29676 1cqqA 180 2.75e+01 1cqqA b.47.1.4 26422 1bueA 265 2.79e+01 1btl e.3.1.1 42727 1dwlA 59 2.91e+01 i.4.1.1 45912 1qxpA 900 2.91e+01 1db3A 372 3.15e+01 1db3A c.2.1.2 29813 1j58A 385 3.19e+01 b.82.1.2 71531 1lddA 74 3.20e+01 a.4.5.34 73841 1dmgA 225 3.44e+01 1dmgA c.22.1.1 31036 1n8lA 89 3.45e+01 a.28.1.1 85421 1kjvB 100 3.53e+01 b.1.1.2 77423 1oypA 245 3.55e+01 3fruB 99 3.55e+01 1agdB b.1.1.2 20658 1oysA 245 3.63e+01 1es7B 89 3.70e+01 1es7B g.7.1.3 44465