# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1n9lA 109 2.54e-01 d.110.3.6 85468 3fruA 269 1.92e+00 1agdA b.1.1.2 20657 d.19.1.1 38150 1ecsA 126 2.67e+00 1ecsA d.32.1.2 59407 1kfuS 184 3.10e+00 a.39.1.8 68574 1ewjA 126 3.70e+00 1ecsA d.32.1.2 59526 1j5uA 136 4.49e+00 d.208.1.1 71584 1alvA 173 4.78e+00 1alvA a.39.1.8 17370 1f5nA 592 5.15e+00 1dg3A a.114.1.1 19077 c.37.1.8 32152 1dg3A 592 5.93e+00 1dg3A a.114.1.1 19078 c.37.1.8 32153 1jvr 137 6.04e+00 1jvr a.61.1.2 18132 3bamA 213 6.71e+00 1bam c.52.1.3 33288 1ksoA 101 7.24e+00 a.39.1.2 72926 1p4xA 250 7.46e+00 a.4.5.28 87784 a.4.5.28 87785 1t3uA 104 7.73e+00 1a5r 103 8.73e+00 1a5r d.15.1.1 37597 1r8oA 96 9.70e+00 1esfA 233 1.04e+01 3seb b.40.2.2 25146 d.15.6.1 37735 1j58A 385 1.06e+01 b.82.1.2 71531 1aho 64 1.13e+01 1aho g.3.7.1 44127 1nkpA 88 1.16e+01 a.38.1.1 80573 1c9oA 66 1.24e+01 1mjc b.40.4.5 25325 1lddA 74 1.25e+01 a.4.5.34 73841 1dyqA 234 1.27e+01 3seb b.40.2.2 59140 d.15.6.1 59141 1hxvA 113 1.33e+01 d.26.1.1 71089 2tgf 50 1.44e+01 3tgf g.3.11.1 44291 1vk8A 106 1.44e+01 1nw1A 429 1.46e+01 d.144.1.8 86286 1put 106 1.51e+01 1ayfA d.15.4.1 37680 1hmy 327 1.53e+01 6mhtA c.66.1.26 34229 1dgsA 667 1.75e+01 1dgsA a.60.2.2 17963 b.40.4.6 25365 d.142.2.2 41581 1fjxA 327 1.86e+01 6mhtA c.66.1.26 34228 1oqqA 106 1.93e+01 3tgf 50 1.94e+01 3tgf g.3.11.1 44292 2af8 86 1.99e+01 2af8 a.28.1.1 16933 1gd2E 70 2.00e+01 1gd2G h.1.3.1 45528 1a79A 171 2.05e+01 1a79A c.52.2.1 33340 d.75.1.1 39739 1moxC 50 2.09e+01 6mhtA 327 2.15e+01 6mhtA c.66.1.26 34226 1af8 86 2.23e+01 2af8 a.28.1.1 16932 1esgA 213 2.23e+01 1bam c.52.1.3 33286 3mhtA 327 2.39e+01 6mhtA c.66.1.26 34234 1lpvA 52 2.41e+01 g.62.1.1 78124 1gd2G 70 2.49e+01 1gd2G h.1.3.1 45530 4tgf 50 2.51e+01 3tgf g.3.11.1 44294 1i5jA 79 2.62e+01 1i5jA j.39.1.1 61788 1ceeB 59 2.92e+01 1ceeB 1yuf 50 2.93e+01 3tgf g.3.11.1 44295 1bfa 134 3.00e+01 1bea a.52.1.2 17827 1f3hA 142 3.03e+01 1f3hA g.52.1.1 45381 1sj1A 66 3.10e+01 1m7lA 40 3.13e+01 h.1.1.1 78735 1itm 130 3.15e+01 1rcb a.26.1.2 16858 1bea 127 3.28e+01 1bea a.52.1.2 17826 1op0A 234 3.52e+01 1fjgM 126 3.59e+01 1fjfM a.156.1.1 16293 1rwzA 245 3.59e+01 1suh 146 3.62e+01 1edhA b.1.6.1 22206 1fqvD 149 3.74e+01 1fqvD a.157.1.1 19263 d.42.1.1 38667 1fqvJ 149 3.97e+01 1fqvD a.157.1.1 19266 d.42.1.1 38670