# TARGET T0201 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0201.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 25.3946 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.363 0.003 0.002 0.002 0.062 0.568 2 I 0.845 0.003 0.001 0.001 0.020 0.130 3 K 0.940 0.001 0.001 0.001 0.012 0.046 4 V 0.953 0.005 0.001 0.001 0.006 0.035 5 T 0.912 0.005 0.001 0.001 0.053 0.028 6 V 0.611 0.005 0.004 0.001 0.325 0.054 7 T 0.205 0.004 0.008 0.001 0.705 0.076 8 N 0.232 0.006 0.006 0.001 0.696 0.060 9 S 0.564 0.005 0.003 0.001 0.233 0.195 10 F 0.931 0.005 0.001 0.001 0.017 0.046 11 F 0.979 0.002 0.001 0.001 0.005 0.014 12 E 0.980 0.001 0.001 0.001 0.004 0.014 13 V 0.931 0.003 0.001 0.001 0.014 0.051 14 T 0.772 0.006 0.003 0.002 0.071 0.146 15 G 0.601 0.015 0.011 0.004 0.161 0.207 16 H 0.249 0.041 0.020 0.008 0.343 0.339 17 A 0.103 0.027 0.033 0.016 0.655 0.165 18 P 0.044 0.012 0.082 0.055 0.695 0.113 19 D 0.018 0.007 0.131 0.106 0.644 0.095 20 K 0.044 0.020 0.127 0.155 0.524 0.131 21 T 0.097 0.057 0.064 0.509 0.124 0.149 22 L 0.101 0.027 0.075 0.646 0.063 0.088 23 C 0.028 0.005 0.072 0.846 0.024 0.025 24 A 0.006 0.001 0.049 0.926 0.011 0.007 25 S 0.001 0.001 0.026 0.965 0.005 0.003 26 V 0.001 0.001 0.011 0.984 0.003 0.002 27 S 0.001 0.001 0.005 0.993 0.001 0.001 28 L 0.001 0.001 0.004 0.995 0.001 0.001 29 L 0.001 0.001 0.002 0.997 0.001 0.001 30 T 0.001 0.001 0.001 0.998 0.001 0.001 31 Q 0.001 0.001 0.001 0.999 0.001 0.001 32 H 0.001 0.001 0.001 0.999 0.001 0.001 33 V 0.001 0.001 0.001 0.999 0.001 0.001 34 A 0.001 0.001 0.001 0.998 0.001 0.001 35 N 0.001 0.001 0.002 0.997 0.001 0.001 36 F 0.001 0.001 0.002 0.994 0.001 0.002 37 L 0.001 0.001 0.004 0.992 0.002 0.002 38 K 0.001 0.001 0.010 0.978 0.007 0.003 39 A 0.001 0.001 0.010 0.974 0.009 0.005 40 E 0.004 0.002 0.019 0.897 0.033 0.045 41 K 0.007 0.003 0.038 0.680 0.128 0.145 42 K 0.023 0.002 0.031 0.258 0.257 0.429 43 A 0.137 0.008 0.016 0.149 0.177 0.513 44 K 0.358 0.008 0.007 0.045 0.138 0.444 45 I 0.679 0.011 0.009 0.026 0.068 0.207 46 K 0.792 0.014 0.005 0.015 0.059 0.115 47 K 0.696 0.010 0.019 0.012 0.230 0.032 48 E 0.444 0.006 0.028 0.008 0.445 0.070 49 S 0.117 0.002 0.036 0.006 0.754 0.085 50 G 0.365 0.008 0.004 0.001 0.490 0.133 51 Y 0.688 0.006 0.001 0.001 0.045 0.260 52 L 0.953 0.003 0.001 0.001 0.010 0.033 53 K 0.981 0.001 0.001 0.001 0.004 0.015 54 V 0.977 0.002 0.001 0.001 0.002 0.018 55 K 0.927 0.002 0.001 0.001 0.014 0.056 56 F 0.612 0.003 0.037 0.012 0.169 0.167 57 E 0.277 0.004 0.137 0.017 0.380 0.185 58 E 0.070 0.009 0.186 0.032 0.579 0.123 59 L 0.029 0.014 0.092 0.054 0.691 0.119 60 E 0.036 0.009 0.036 0.110 0.441 0.369 61 N 0.015 0.006 0.033 0.694 0.157 0.095 62 C 0.019 0.004 0.012 0.841 0.049 0.075 63 E 0.008 0.002 0.003 0.969 0.004 0.015 64 V 0.003 0.001 0.001 0.991 0.002 0.003 65 K 0.002 0.001 0.002 0.992 0.001 0.002 66 V 0.001 0.001 0.001 0.996 0.001 0.001 67 L 0.001 0.001 0.001 0.997 0.001 0.001 68 A 0.001 0.001 0.001 0.998 0.001 0.001 69 A 0.001 0.001 0.001 0.998 0.001 0.001 70 M 0.001 0.001 0.001 0.997 0.001 0.001 71 V 0.001 0.001 0.004 0.993 0.002 0.001 72 R 0.001 0.001 0.006 0.987 0.004 0.002 73 S 0.001 0.001 0.004 0.974 0.004 0.018 74 L 0.001 0.001 0.005 0.984 0.003 0.008 75 K 0.001 0.001 0.008 0.982 0.005 0.005 76 E 0.001 0.001 0.009 0.982 0.005 0.003 77 L 0.001 0.001 0.017 0.969 0.009 0.005 78 E 0.001 0.001 0.042 0.932 0.018 0.007 79 Q 0.001 0.001 0.035 0.925 0.024 0.014 80 K 0.002 0.002 0.042 0.789 0.054 0.112 81 F 0.006 0.009 0.029 0.045 0.291 0.621 82 P 0.005 0.002 0.313 0.019 0.463 0.197 83 S 0.024 0.001 0.269 0.011 0.546 0.149 84 Q 0.384 0.008 0.078 0.005 0.301 0.224 85 I 0.878 0.003 0.001 0.001 0.023 0.093 86 R 0.973 0.001 0.001 0.001 0.004 0.022 87 V 0.982 0.001 0.001 0.001 0.002 0.015 88 E 0.977 0.001 0.001 0.001 0.003 0.018 89 V 0.968 0.001 0.001 0.001 0.005 0.025 90 I 0.924 0.004 0.001 0.003 0.041 0.029 91 D 0.681 0.007 0.002 0.005 0.185 0.120 92 N 0.151 0.007 0.006 0.021 0.486 0.330 93 G 0.103 0.017 0.004 0.004 0.335 0.537 94 S 0.034 0.004 0.001 0.001 0.036 0.925