a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0201 1167B, Thermotoga maritima
- gi|46907769|ref|YP_014158.1|_1:103 conserved hypothetical protein [Listeria monocytogenes str. 4b F2365]
- gi|47094570|ref|ZP_00232225.1| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858]
- gi|46881038|gb|AAT04335.1| conserved hypothetical protein [Listeria monocytogenes str. 4b F2365]
- gi|47017054|gb|EAL07932.1| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858]
- gi|13357770|ref|NP_078044.1|_1:99 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC 700970]
- gi|11279488|pir||E82920 conserved hypothetical UU211 [imported] - Ureaplasma urealyticum [Taxonomy]
- gi|6899178|gb|AAF30619.1| conserved hypothetical [Ureaplasma urealyticum]
- gi|16800644|ref|NP_470912.1|_1:103 similar to unknown protein [Listeria innocua Clip11262]
- gi|25380878|pir||AG1629 hypothetical protein homolog lin1576 [imported] - Listeria innocua (strain Clip11262) [Taxonomy]
- gi|16414063|emb|CAC96807.1| lin1576 [Listeria innocua]
- gi|16803581|ref|NP_465066.1|_1:103 similar to unknown protein [Listeria monocytogenes EGD-e]
- gi|25380877|pir||AE1267 hypothetical protein lmo1541 [imported] - Listeria monocytogenes (strain EGD-e) [Taxonomy]
- gi|16410970|emb|CAC99619.1| lmo1541 [Listeria monocytogenes]
- gi|27468247|ref|NP_764884.1|_6:106 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228]
- gi|27315793|gb|AAO04928.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228]
- gi|15673062|ref|NP_267236.1|_5:111 hypothetical protein L90693 [Lactococcus lactis subsp. lactis Il1403]
- gi|25380872|pir||H86759 hypothetical protein ykjA [imported] - Lactococcus lactis subsp. lactis (strain IL1403) [Taxonomy]
- gi|12724035|gb|AAK05178.1| HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis]
- gi|28211679|ref|NP_782623.1|_1:107 hypothetical protein CTC02059 [Clostridium tetani E88]
- gi|28204121|gb|AAO36560.1| hypothetical protein [Clostridium tetani E88]
- gi|29375552|ref|NP_814706.1|_1:113 conserved hypothetical protein [Enterococcus faecalis V583]
- gi|29343013|gb|AAO80776.1| conserved hypothetical protein [Enterococcus faecalis V583]
- gi|15900973|ref|NP_345577.1|_5:113 conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
- gi|25380874|pir||H95127 conserved hypothetical protein SP1106 [imported] - Streptococcus pneumoniae (strain TIGR4) [Taxonomy]
- gi|14972581|gb|AAK75217.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
- gi|15924636|ref|NP_372170.1|_6:110 conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50]
- gi|15644206|ref|NP_229256.1|_1:94 hypothetical protein TM1457 [Thermotoga maritima MSB8]
- gi|7462465|pir||B72251 hypothetical protein - Thermotoga maritima (strain MSB8) [Taxonomy]
- gi|4982022|gb|AAD36525.1| hypothetical protein [Thermotoga maritima]
- gi|23099500|ref|NP_692966.1|_1:109 hypothetical protein OB2045 [Oceanobacillus iheyensis HTE831]
- gi|22777729|dbj|BAC14001.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
- gi|15927226|ref|NP_374759.1|_6:106 conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315]
- gi|25380880|pir||E89947 conserved hypothetical protein SA1472 [imported] - Staphylococcus aureus (strain N315) [Taxonomy]
- gi|13701444|dbj|BAB42738.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315]
- gi|46395531|dbj|BAB57808.2| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50]
- gi|21402490|ref|NP_658475.1|_1:107 hypothetical protein predicted by GeneMark [Bacillus anthracis A2012]
- gi|30022518|ref|NP_834149.1| hypothetical ribosome-associated protein [Bacillus cereus ATCC 14579]
- gi|30264512|ref|NP_846889.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
- gi|47529974|ref|YP_021323.1| conserved hypothetical protein [Bacillus anthracis str. Ames 0581]
- gi|47566634|ref|ZP_00237456.1| hypothetical protein ribosome-associated protein [Bacillus cereus G9241]
- gi|29898076|gb|AAP11350.1| hypothetical ribosome-associated protein [Bacillus cereus ATCC 14579]
- gi|30259170|gb|AAP28375.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
- gi|47505122|gb|AAT33798.1| conserved hypothetical protein [Bacillus anthracis str. Ames 0581]
- gi|47556664|gb|EAL14996.1| hypothetical protein ribosome-associated protein [Bacillus cereus G9241]
- gi|16079847|ref|NP_390673.1|_5:107 similar to hypothetical proteins [Bacillus subtilis]
- gi|141394|sp|P26942|YSXB_BACSU Hypothetical protein ysxB [Taxonomy]
- gi|98391|pir||S18440 conserved hypothetical protein ysxB - Bacillus subtilis [Taxonomy]
- gi|40174|emb|CAA42109.1| unnamed protein product [Bacillus subtilis]
- gi|2635260|emb|CAB14755.1| ysxB [Bacillus subtilis subsp. subtilis str. 168]
- gi|45530165|ref|ZP_00181300.1|_1:112 COG2868: Predicted ribosomal protein [Moorella thermoacetica ATCC 39073]
- gi|28378294|ref|NP_785186.1|_1:111 ribosomal protein (putative) [Lactobacillus plantarum WCFS1]
- gi|28271129|emb|CAD64034.1| ribosomal protein (putative) [Lactobacillus plantarum WCFS1]
- gi|42783581|ref|NP_980828.1|_1:107 conserved hypothetical protein [Bacillus cereus ATCC 10987]
- gi|42739510|gb|AAS43436.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
- gi|22991073|ref|ZP_00035835.1|_1:113 COG2868: Predicted ribosomal protein [Enterococcus faecium]
- gi|15903057|ref|NP_358607.1|_5:113 Conserved hypothetical protein [Streptococcus pneumoniae R6]
- gi|25380870|pir||E97998 conserved hypothetical protein spr1013 [imported] - Streptococcus pneumoniae (strain R6) [Taxonomy]
- gi|15458630|gb|AAK99817.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
- gi|15639731|ref|NP_219181.1|_2:105 conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols]
- gi|7514617|pir||E71286 conserved hypothetical protein TP0744 - syphilis spirochete [Taxonomy]
- gi|3323050|gb|AAC65712.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum str. Nichols]
- gi|15615572|ref|NP_243876.1|_1:108 BH3010~unknown conserved protein in B. subtilis [Bacillus halodurans C-125]
- gi|25380869|pir||B84026 hypothetical protein BH3010 [imported] - Bacillus halodurans (strain C-125) [Taxonomy]
- gi|10175632|dbj|BAB06729.1| BH3010 [Bacillus halodurans C-125]
- gi|23020095|ref|ZP_00059801.1|_1:104 COG2868: Predicted ribosomal protein [Clostridium thermocellum ATCC 27405]
- gi|13508065|ref|NP_110014.1|_1:100 conserved hypothetical protein [Mycoplasma pneumoniae M129]
- gi|2496339|sp|P75459|Y233_MYCPN Hypothetical protein MG233 homolog (F10_orf100a) [Taxonomy]
- gi|2146316|pir||S73836 hypothetical protein ysxB - Mycoplasma pneumoniae (strain ATCC 29342) [Taxonomy]
- gi|1674204|gb|AAB96158.1| conserved hypothetical protein [Mycoplasma pneumoniae]
- gi|24213550|ref|NP_711031.1|_3:108 hypothetical protein [Leptospira interrogans serovar lai str. 56601]
- gi|24194336|gb|AAN48049.1| hypothetical protein [Leptospira interrogans serovar lai str. 56601]
- gi|45658608|ref|YP_002694.1|_3:108 conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130]
- gi|45601852|gb|AAS71331.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130]
- gi|24379303|ref|NP_721258.1|_1:110 conserved hypothetical protein [Streptococcus mutans UA159]
- gi|24377224|gb|AAN58564.1| conserved hypothetical protein [Streptococcus mutans UA159]
- gi|46113062|ref|ZP_00182244.2|_1:110 COG2868: Predicted ribosomal protein [Exiguobacterium sp. 255-15]
- gi|15674861|ref|NP_269035.1|_1:107 conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
- gi|19745901|ref|NP_607037.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
- gi|21910089|ref|NP_664357.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
- gi|28896213|ref|NP_802563.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
- gi|13621997|gb|AAK33756.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
- gi|19748055|gb|AAL97536.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
- gi|21904280|gb|AAM79160.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
- gi|28811464|dbj|BAC64396.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
- gi|34763676|ref|ZP_00144602.1|_3:109 hypothetical ribosome-associated protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
- gi|27886600|gb|EAA23800.1| hypothetical ribosome-associated protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
- gi|19704453|ref|NP_604015.1|_3:109 unknown [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
- gi|19714717|gb|AAL95314.1| unknown [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
- gi|20807395|ref|NP_622566.1|_1:106 predicted ribosomal protein [Thermoanaerobacter tengcongensis]
- gi|20515915|gb|AAM24170.1| predicted ribosomal protein [Thermoanaerobacter tengcongensis]
- gi|12045088|ref|NP_072899.1|_1:97 conserved hypothetical protein [Mycoplasma genitalium G-37]
- gi|1351519|sp|P47475|Y233_MYCGE Hypothetical protein MG233 [Taxonomy]
- gi|1361803|pir||G64225 ribosomal protein L21 homolog - Mycoplasma genitalium [Taxonomy]
- gi|406335|gb|AAD12419.1| Homology to ORFX X59528 [Mycoplasma genitalium]
- gi|3844837|gb|AAC71454.1| conserved hypothetical protein [Mycoplasma genitalium]
- gi|26553895|ref|NP_757829.1|_1:100 conserved hypothetical protein [Mycoplasma penetrans HF-2]
- gi|26453902|dbj|BAC44233.1| conserved hypothetical protein [Mycoplasma penetrans HF-2]
- gi|25011481|ref|NP_735876.1|_1:105 Unknown [Streptococcus agalactiae NEM316]
- gi|24413019|emb|CAD47098.1| Unknown [Streptococcus agalactiae NEM316]
- gi|22537516|ref|NP_688367.1|_1:105 conserved hypothetical protein [Streptococcus agalactiae 2603V/R]
- gi|22534396|gb|AAN00240.1| conserved hypothetical protein [Streptococcus agalactiae 2603V/R]
- gi|39938573|ref|NP_950339.1|_1:109 conserved hypothetical protein [Onion yellows phytoplasma OY-M]
- gi|39721682|dbj|BAD04172.1| conserved hypothetical protein [Onion yellows phytoplasma]
- gi|45534665|ref|ZP_00185221.1|_1:100 hypothetical protein Mflo092001 [Mesoplasma florum L1]
- gi|41179241|ref|NP_958581.1|_1:92 putative protein [Lactobacillus johnsonii prophage Lj965]
- gi|42518400|ref|NP_964330.1| Lj965 prophage protein [Lactobacillus johnsonii prophage Lj965]
- gi|38731511|gb|AAR27457.1| putative protein [Lactobacillus johnsonii prophage Lj965]
- gi|41582685|gb|AAS08296.1| Lj965 prophage protein [Lactobacillus johnsonii prophage Lj965]
- gi|9629538|ref|NP_044826.1|_3:102 hypothetical protein Cp-1p14 [Streptococcus phage Cp-1]
- gi|4691222|emb|CAA87748.2| orf13 [Streptococcus phage Cp-1]
- gi|15894540|ref|NP_347889.1|_1:123 Hypothetical protein CAC1258 [Clostridium acetobutylicum ATCC 824]
- gi|25496746|pir||B97055 hypothetical protein CAC1258 [imported] - Clostridium acetobutylicum [Taxonomy]
- gi|15024185|gb|AAK79229.1| Hypothetical protein [Clostridium acetobutylicum ATCC 824]
- gi|42527256|ref|NP_972354.1|_3:128 conserved hypothetical protein [Treponema denticola ATCC 35405]
- gi|41817680|gb|AAS12265.1| conserved hypothetical protein [Treponema denticola ATCC 35405]
- gi|15595124|ref|NP_212913.1|_5:106 B. burgdorferi predicted coding region BB0779 [Borrelia burgdorferi B31]
- gi|7463403|pir||B70197 hypothetical protein BB0779 - Lyme disease spirochete [Taxonomy]
- gi|2688728|gb|AAC67136.1| B. burgdorferi predicted coding region BB0779 [Borrelia burgdorferi B31]

                                   10                             20   
                                   |                              |   
   1 .....MIK....V....TV....T....NSF.....F....E..V..TGHA.....PD...KTLC
   2 .....MIQ....V....DVmre.D....NQIis...F....T..M..SGHAdfaehGS...DLVC
   3 .....MIK....I....NH....Y....PNA.....L....L..V..KGHAnfdehGK...DIVC
   4 .....MIQ....V....DVmre.N....NQIvs...F....T..M..SGHAdfaehGS...DLVC
   5 .....MIQ....V....DVmre.D....NQIis...F....T..M..SGHAdfaehGS...DLVC
   6 tvd..-IT....V....ND....E....GKVtd...V....V..M..DGHAnhgeyGH...DIVC
   7 iea..CIR....T....KR....D....KIVs....Y....E..I..SGHAesgeyGH...DVVC
   8 mita.IFK....K....KC....N....NIIs....F....N..I..EGHAnsveaGY...DLVC
   9 .....MIKgs..F....KR....T....GSGrivs.F....E..L..TGHAeagpyGS...DVVC
  10 iqa..VFE....R....AE....D....GEL.....Rsa..E..I..TGHAesgeyGL...DVVC
  11 tvd..-IT....V....ND....E....GKV.....T....D..VimDGHAdhgeyGH...DIVC
  12 .....MIK....V....TV....T....NSF.....F....E..V..TGHA.....PD...KTLC
  13 .....MIK....V....TVfqt.N....NQIta...F....E..L..SGHAdsgpyGY...DLVC
  14 tvd..-IT....V....ND....E....GKV.....T....D..VimDGHAdhgeyGH...DIVC
  15 .....MIK....I....TI....SrtklGSIqs...F....K..M..TGHAdyaphGQ...DLVC
  16 iqa..TIR....R....SH....D....KGIls...F....E..M..TGHAnfaehGQ...DLVC
  17 .....MIR....V....TFwrgrD....GELgg...F....R..V..TGHAgygpkGG...DIVC
  18 .....MIQatisR....NA....T....GQVta...F....K..L..TGHAdsgayGQ...DIVC
  19 .....MIK....I....TI....SrtklGSIqs...F....K..M..TGHAdyaphGQ...DLVC
  20 .....MIKgtfkR....ND....A....GQIvs...F....T..L..TGHAdagpyGS...DIVC
  21 iqa..VFE....R....AE....D....GEL.....Rsa..E..I..TGHAesgeyGL...DVVC
  22 m....LLE....V....GD....R....GQF.....Lsa..V..A..SGHAargtrGG...DVVC
  23 midv.VFE....R....NK....Q....NDIvs...F....T..M..SGHAdagpyGQ...DLVC
  24 .....MIK....V....EVir..D....SER.....FirelK..I..KGHAgygrsGK...DIVC
  25 .....MIK....L....TV....S....HHK.....L....T..A..SGHAlfakkGQ...DIVC
  26 mi...RIR....I....TR....T....GEF.....Yssl.E..S..EGHSsv7kkGE...NLLC
  27 mi...RIR....I....TR....T....GEF.....Yssl.E..T..EGHSsv7kkGE...NLLC
  28 .....MIQatf.I....RR....K....GILes...V....E..L..TGHAgsgeyGF...DIVC
  29 .....MIR....V....KI....R....RDEad6rsI....E..V..TGHAefaepGL...DLVC
  30 .....MIKaiftR....QK....N....GQLss...V....T..L..TGHAgsgkhGF...DIVC
  31 mt...KVE....I....FRk...N....GSIvg...Y....K..A..SGHSgyseqGS...DIIC
  32 mt...KVE....I....FRk...N....GSIvg...Y....K..A..SGHSgyseqGS...DIIC
  33 .....MIE....V....KVwrnpQ....GDI.....Y....KfyV..KGHAgydeyGK...DIVC
  34 .....MIK....I....NI....S....QNF.....L....V..A..KGHAlfaekGK...DIVC
  35 .....MIL....I....DF....Y....LDG.....F....K..V..SGHAqyddvGK...DIVC
  36 .....MIKatftR....NQ....S....GYL.....Ysa..E..I..SGHAgsgeyGF...DVIC
  37 .....MIKatftR....NQ....S....GYL.....Ysa..E..I..SGHAgsgeyGF...DVIC
  38 .....MIR....Y....CF....Y....KEQkkitsI....Q..V..WGHAlyapkGF...DIVC
  39 .....MIK....V....KI....K....NEGellkqF....E..I..SGHAesgpyGQ...DLVC
  40 mirvrMIK....-....KP....D....QTI.....I....R..A..TGHAqysvkGS...DIVC
  41 .....MII....I....NL....S....ETTdtlq.I....E..V..TGHG.....DDt..DQSC
  42 .....MID....Vvf..KK....K....NNVvvs..Y....V..I..TGHAd21mlYD...NAVC
  43 .....MVK....IrllsNA....E....NCFsa...F....E..S..SGHAg21ekGG...NIVC
  44 inv..LVK....V....KD....D....VII.....Yl...L..A..NGHAi....GKnnvNVVC


           30              40                        50                
           |               |                         |                
   1 ASVSLLTQHVANFL....KA..EK...KAK..I.....KK..E....SG..YLKVK..F.....E
   2 AGASSIAFGMVNAI....SE..VR...DFE..P.....VI..Ees..EG..YLYYS..V.....P
   3 AGVSAIIMGALNWF....DQ..-Q...KTT..I.....KV..E....QG..FILII..I.....D
   4 AGASSIAFGMVNAI....SE..VR...DFE..P.....VF..Ees..EG..YLYYS..V.....P
   5 AGASSIAFGMVNAI....SE..VR...DFD..P.....VI..Ees..EG..YLYYS..V.....P
   6 AGASAVLFGSVNAImgltSE..KP...DIN..Y.....ED..D....GG..YFHIRs.V.....D
   7 AAVSVLSITTANNI....YE..MA...HIK..Pvt...QM..E....DG..YLYVE..I.....P
   8 CAVSAVSITIANGI....TE..VA...KVNssI.....HM..E....DG..FLSLN..L.....E
   9 AAVSALAISTVNGI....DA..LA...GFE..PivevdDV..E....GG..YLYVE..MlttvnQ
  10 ASVSTLAINFINSI....EK..FA...GYE..PilelnED..E....GG..YLMVE..I.....P
  11 AGASAVLFGSVNAIigltSE..RP...DIN..Y.....DD..N....GG..HFHIRs.V.....D
  12 ASVSLLTQHVANFL....KA..EK...KAK..I.....KK..E....SG..YLKVK..F.....E
  13 AGVSAVSFGGVNAV....IK..LC...DTD..L.....HI..DqgkdGG..YLYVG..I.....P
  14 AGASAVLFGSVNAIigltSE..RP...DIN..Y.....DD..N....GG..HFHIRs.V.....D
  15 AGTTAVVFGSINAV....EE..LC...NVQ..A.....TI..ElgsdGG..FLTYE..L.....P
  16 AGVTAVVFGAVNAV....IV..LA...GFE..Plldi.GE..D....GG..YFYFE..F.....P
  17 AAVSALAQTAVLGL....EDqlEG...KPQ..V.....TI..R....DG..DLQCR..L.....P
  18 AAVSVLAISTINGI....EQ..VA...RLQ..PvvqsdET..N....GG..LLIAD..F.....T
  19 AGTTAVVFGSINAV....EE..LC...NVQ..A.....TI..ElgsdGG..FLTYE..L.....P
  20 AGVSALAISTVNGI....AS..LA...GFE..PivemnEE..E....GG..YLYTE..VtsgmtQ
  21 ASVSTLAINFINSI....EK..FA...GYE..PilelnED..E....GG..YLMVE..I.....P
  22 AAVSVLLRTAVLGL....ER..LG...PQI..E.....AA..D....RG..FLSFR..V.....G
  23 AGASAVALGTVNAI....IA..LC...QVE..Lvtem.EN..E....GG..FLRCR..V.....P
  24 AAVSALAYTAAGAL....EE..LA...GIKg.Y.....NE..R....NG..YMRCT..V.....P
  25 AAVSGIIFGALPWF....E-..TN...SIA..V.....QE..D....AT..VPSLS..L.....E
  26 SAVSVLVQTLYLYL....LQ..SG...KTK..Pa....EV..R....DG..YLRFE..V.....L
  27 SAVSVLVQTLYLYL....LQ..SG...KTK..Pa....EV..R....DG..YLRFE..V.....L
  28 AAVSTLSMNLVNAL....EV..LA...DCT..VslqmdEF..D....GG..YMKID..L.....S
  29 AGTSSVIFGAYNAI....ES..LL...GQV..Lll6aeQQ..E....GG..YFYVE..PyadlaP
  30 ASVSTLAINFVNSL....EV..LA...DCQ..AlvdlnDV..E....GG..YMAIT..I.....P
  31 SAISTSMQMTLAGI....QE..VL...KLK..P.....KF..Kln..DS..FLDVD..L.....K
  32 SAIATSLQMTLAGI....QE..VL...KLE..P.....KF..Kin..DG..FLDVD..L.....K
  33 AAVSAISQTAVLGI....EN..IK...GVK..Irk...EI..E....EG..NLEVE..V.....K
  34 AAISGIIFGGVAWF....E-..PD...KIE..F.....TE..N....KL..VPSIA..L.....K
  35 SAISGICFGSINWF....DQ..KD...ILI..F.....ES..D....QSkpELVLK..L.....K
  36 AAVSTLSINFINSL....EA..LT...TCQ..AqliinDV..E....GG..YMKID..L.....S
  37 AAVSTLSINFINSL....EA..LT...TCQ..AqliinDV..E....GG..YMKID..L.....S
  38 ASVSTAIIVTLNAL....EK..LQfqtDIT..Y.....NL..Q....DK..LFELE..V.....K
  39 AAVSGITFGALNAL....DI..HF...SKE..V.....DL..Kvl..EN..KIVIT..N.....N
  40 ASFSTLITHTVN--....-N..CT...KVT..A.....TD..K....DG..VLIAT..F.....S
  41 ARVSTVCDCIYLFL....KS..NI...D-D..Y.....VK..K....DG..YTLLR..I.....-
  42 SAVSLLGQVCILGI....EE..VL...HIK..V.....NYsaK....EG..YIALN..L.....E
  43 AAVTILLKTAVLSLssaqKE..SS...SLK..A.....EI..Radn.PG..YLSAK..Itafs.G
  44 SSFSFILRTFFSVL....DL..EG...EAF..Vvk...NS..K....RG..YLEFKpfF.....K


              60                           70        80        90      
              |                            |         |         |      
   1 ..E.L....E....N.C....E...VK.V..L....AAMVRSLKELEQKFPSQIRVEVIDNG...
   2 a.D.Yvg..D....D.V....V...QI.L..L....TGMENQLRSLAYSYPDHIKINSK---...
   3 ..N.N....N....Q.L....Y...RQ.Y..L....ELIIIQLKAIYFKYQSYIELHEYKQQykr
   4 a.D.Fvg..D....D.V....V...QI.L..L....TGMENQLRSLAYSYPDHIKINSK---...
   5 a.D.Yvg..D....D.V....V...QI.L..L....TGMENQLRSLAYSYPDHIKINSK---...
   6 ..T.N....N....K.E....A...QL.I..L....QAMLVSLQTIEEEYNENIKLNYK---...
   7 l.S.I....P....E.KqgvlA...QT.L..L....EAFANSMKAVEKSYGQYITLKFENGG...
   8 ..N.N....SlehiN.K....C...QM.L..M....ETMILGLKSIERNYSEYINVIIEEVE...
   9 ..E.Q....K....N.I....A...QI.L..L....ENLLLGLQSIENENTEFIQIKTITEK...
  10 k.D.L....PshqrE.M....T...QL.F..F....ESFFLGMANLSENYSEFVQTRVITEN...
  11 ..T.N....N....D.E....A...QL.I..L....QTMLVSLHTIEEEYNENIRLNYKCGAsrw
  12 ..E.L....E....N.C....E...VK.V..L....AAMVRSLKELEQKFPSQIRVEVIDNG...
  13 e.D.L....DlevaE.R....I...QL.L..L....EGMVVSLQTIEAEYGNHMQVNYK---...
  14 ..T.N....N....D.E....A...QL.I..L....QTMLVSLQTIEEEYNENIRLNYK---...
  15 n.D.L....DvhaaE.K....A...QT.L..L....EGLVVSLKTIELDYGKYIRLIEK---...
  16 e.S.L....GpearQ.K....A...QL.L..I....EGMIVSLETIERDYKDNLRVTTN---...
  17 a.D.L....SpagaR.T....A...RV.I..L....RTLEVGLNTIATDYRPYVQVEYKT--lts
  18 ..K.L....Dlan.T.Q....L...QT.L..L....ESFTLGLNDVATNYGDYIRVREQTR-...
  19 n.D.L....DihtaE.K....A...QI.L..L....EGLVVSLKTIELDYGKYIRLIEK---...
  20 ..E.Q....N....N.I....A...EI.L..L....ENLLLGLQSIEAENSEYIQIKTINDK...
  21 k.D.L....PshqrE.M....T...QL.F..F....ESFFLGMANLSENSSEFVQTRVITEN...
  22 ..G.C....P....D.S....A...LA.L..LcftaEFLERGLRTLMQEYPSSVHLCVRRG-vvc
  23 n.D.L....EettfE.K....V...QL.L..L....EGMNISLQSIAESYGEHIQIEERI--...
  24 k.D.I....PedkkE.M....V...RT.I..L....ETVVIGLKQVELGYGKYVSVLDK---...
  25 ..L.V....Q....P.T....A...KL.ItgL....SVVIMQLKTLAHSYPQFISFEDQRKD...
  26 ..E.Q....D....V.L....I...QN.S..F....DLVLSGLKNLKNQYPTEIELIGVPENgt.
  27 ..E.Q....D....V.L....I...QN.S..F....DLVLSGLKNLKNQYPTEIELIGVPENgt.
  28 ..Y.ItnksD....E.K....V...QL.L..F....EAFLLGITNLAENSPEFVTAKIMTQ-...
  29 ..D.V....S....E.R....T...QL.L..L....EAMLVQLGTIADSYGEFIQLEQI---...
  30 phD.N....K....E.E....V...QL.L..F....ESFLLGMTSLAKDSSKFVNTQVI---...
  31 ..D.I....S....Q.N....KfteIN.I..Lt...ESMALFLKELAKQYPKYIRLVEKEEK...
  32 ..D.I....S....Q.N....KfteIN.I..Lt...ESMALFLRELAKQYPKYIRLVEKEEK...
  33 ..EvL....K....E.EdkikL...QA.I..L....ETMVLGLKDVASGYSEYVKVEEV---...
  34 ..L.I....Dpt..P.N....V...AV.A..F....SVITVQLKAIANSYPNHI-VINEESY...
  35 ..M.N....Q....R.N....K...IG.I..-....SLIETQVKTISDSYSQFCKFKKYNKEle.
  36 ..S.I....PqhkeD.K....V...QL.L..F....ESYLLGMTNLSKDSSEFVSTI-----...
  37 ..S.I....PqhkeD.K....V...QL.L..F....ESYLLGMTNLSKDSSEFVSTV-----...
  38 ..T.T....Q....N.T....V...LFtL..L....DNLEYTICNLAKQYPNNFKKISKIQTrkr
  39 ..N.Ie...N....Q.S....L...QT.M..L....KMLKIQLSTIQTQYKQFIEIMEV---...
  40 ..D.P....K....SiE....N...KT.L..L....NAFENTVNQLIDQYGQYICWC-----...
  41 ..F.K....K....R.T....T...VQ.T..L....KAILSYIVTLEQLYKNSIKVINKEKEve7
  42 ..N.L....DlndlE.R....A...QV.L..M....KTTLLGFENLAESYDEYIKVSVEE--v..
  43 ..D.D....K....P.R....L...QY.L..L....EFLTIGLMAIEAEYPDCLDLQIE---...
  44 ..D.L....N....K.E....S...LF.Y..Ys...RFLIRGINDLCFEYPNDIKLVLEEN-...


         
        
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