# TARGET T0201 # Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0201.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 35 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.001 0.001 0.001 0.001 0.001 0.998 2 I 0.370 0.030 0.001 0.004 0.004 0.003 0.587 3 K 0.570 0.026 0.001 0.003 0.040 0.003 0.356 4 V 0.653 0.022 0.002 0.002 0.020 0.005 0.296 5 T 0.369 0.016 0.005 0.002 0.038 0.022 0.547 6 V 0.224 0.013 0.021 0.003 0.135 0.293 0.311 7 T 0.057 0.005 0.019 0.002 0.227 0.589 0.099 8 N 0.062 0.004 0.018 0.002 0.511 0.295 0.107 9 S 0.178 0.015 0.009 0.002 0.195 0.056 0.544 10 F 0.737 0.027 0.002 0.001 0.044 0.015 0.174 11 F 0.940 0.009 0.001 0.001 0.006 0.001 0.043 12 E 0.954 0.004 0.001 0.001 0.005 0.001 0.036 13 V 0.909 0.008 0.001 0.001 0.006 0.002 0.074 14 T 0.776 0.015 0.003 0.001 0.054 0.016 0.136 15 G 0.344 0.009 0.005 0.003 0.264 0.042 0.332 16 H 0.138 0.012 0.010 0.006 0.304 0.086 0.444 17 A 0.090 0.035 0.008 0.015 0.328 0.068 0.457 18 P 0.025 0.008 0.029 0.071 0.377 0.141 0.350 19 D 0.007 0.004 0.058 0.223 0.236 0.347 0.126 20 K 0.024 0.009 0.054 0.578 0.081 0.153 0.101 21 T 0.040 0.010 0.015 0.839 0.013 0.027 0.057 22 L 0.027 0.002 0.005 0.922 0.007 0.014 0.023 23 C 0.008 0.001 0.004 0.962 0.004 0.012 0.009 24 A 0.005 0.001 0.005 0.958 0.006 0.017 0.009 25 S 0.003 0.001 0.005 0.963 0.003 0.020 0.005 26 V 0.002 0.001 0.003 0.974 0.004 0.010 0.006 27 S 0.003 0.001 0.002 0.985 0.002 0.005 0.003 28 L 0.002 0.001 0.001 0.989 0.002 0.004 0.002 29 L 0.001 0.001 0.001 0.993 0.001 0.003 0.001 30 T 0.001 0.001 0.001 0.992 0.001 0.004 0.001 31 Q 0.001 0.001 0.001 0.989 0.001 0.007 0.001 32 H 0.002 0.001 0.002 0.984 0.001 0.010 0.002 33 V 0.001 0.001 0.002 0.981 0.002 0.013 0.002 34 A 0.001 0.001 0.002 0.979 0.003 0.012 0.002 35 N 0.002 0.001 0.005 0.961 0.004 0.022 0.005 36 F 0.002 0.001 0.006 0.956 0.005 0.026 0.005 37 L 0.004 0.001 0.009 0.944 0.009 0.021 0.012 38 K 0.008 0.001 0.021 0.893 0.018 0.042 0.017 39 A 0.010 0.001 0.036 0.788 0.031 0.107 0.027 40 E 0.014 0.003 0.050 0.650 0.060 0.138 0.085 41 K 0.026 0.003 0.054 0.349 0.065 0.405 0.098 42 K 0.046 0.002 0.039 0.100 0.104 0.491 0.218 43 A 0.078 0.009 0.012 0.039 0.168 0.028 0.666 44 K 0.342 0.026 0.004 0.016 0.034 0.009 0.568 45 I 0.278 0.007 0.005 0.012 0.022 0.010 0.666 46 K 0.626 0.023 0.008 0.009 0.028 0.026 0.281 47 K 0.418 0.011 0.026 0.011 0.078 0.073 0.384 48 E 0.239 0.007 0.038 0.006 0.191 0.355 0.163 49 S 0.058 0.003 0.024 0.002 0.202 0.665 0.047 50 G 0.194 0.004 0.011 0.001 0.306 0.332 0.152 51 Y 0.756 0.012 0.002 0.001 0.011 0.005 0.213 52 L 0.969 0.004 0.001 0.001 0.002 0.001 0.024 53 K 0.982 0.001 0.001 0.001 0.003 0.001 0.014 54 V 0.974 0.001 0.001 0.001 0.002 0.001 0.022 55 K 0.918 0.007 0.001 0.001 0.004 0.001 0.070 56 F 0.645 0.030 0.003 0.001 0.023 0.005 0.294 57 E 0.150 0.010 0.026 0.005 0.232 0.194 0.383 58 E 0.026 0.014 0.023 0.006 0.310 0.305 0.316 59 L 0.014 0.013 0.014 0.022 0.267 0.089 0.579 60 E 0.009 0.007 0.004 0.038 0.153 0.049 0.740 61 N 0.003 0.003 0.037 0.750 0.069 0.094 0.044 62 C 0.003 0.003 0.021 0.858 0.021 0.064 0.030 63 E 0.002 0.001 0.010 0.961 0.007 0.013 0.008 64 V 0.002 0.001 0.002 0.985 0.003 0.003 0.004 65 K 0.002 0.001 0.001 0.987 0.002 0.005 0.003 66 V 0.001 0.001 0.001 0.992 0.001 0.005 0.001 67 L 0.001 0.001 0.001 0.995 0.001 0.003 0.001 68 A 0.001 0.001 0.001 0.996 0.001 0.002 0.001 69 A 0.001 0.001 0.001 0.995 0.001 0.002 0.001 70 M 0.001 0.001 0.001 0.997 0.001 0.002 0.001 71 V 0.001 0.001 0.001 0.995 0.001 0.003 0.001 72 R 0.001 0.001 0.001 0.981 0.001 0.016 0.001 73 S 0.001 0.001 0.001 0.959 0.001 0.037 0.001 74 L 0.001 0.001 0.001 0.982 0.003 0.010 0.005 75 K 0.001 0.001 0.003 0.988 0.002 0.005 0.002 76 E 0.001 0.001 0.006 0.979 0.002 0.012 0.002 77 L 0.001 0.001 0.009 0.976 0.002 0.011 0.002 78 E 0.001 0.001 0.015 0.964 0.002 0.017 0.002 79 Q 0.001 0.001 0.023 0.802 0.004 0.168 0.003 80 K 0.001 0.001 0.016 0.619 0.022 0.326 0.016 81 F 0.007 0.011 0.015 0.082 0.178 0.083 0.623 82 P 0.008 0.002 0.184 0.038 0.095 0.535 0.136 83 S 0.005 0.001 0.190 0.013 0.058 0.720 0.013 84 Q 0.108 0.008 0.237 0.016 0.139 0.343 0.149 85 I 0.720 0.007 0.003 0.004 0.014 0.006 0.246 86 R 0.928 0.003 0.001 0.002 0.009 0.002 0.056 87 V 0.957 0.006 0.001 0.002 0.002 0.001 0.030 88 E 0.935 0.001 0.002 0.004 0.005 0.002 0.051 89 V 0.877 0.004 0.003 0.007 0.014 0.004 0.091 90 I 0.718 0.005 0.006 0.012 0.034 0.015 0.210 91 D 0.501 0.008 0.010 0.022 0.108 0.050 0.301 92 N 0.300 0.010 0.012 0.031 0.153 0.071 0.423 93 G 0.043 0.007 0.003 0.010 0.006 0.027 0.904 94 S 0.001 0.001 0.001 0.001 0.001 0.001 0.999