# List of top-scoring protein chains for T0201.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hizA 379 1.80e-01 c.1.8.3 65841 1nyoA 163 8.72e-01 1sdxA 335 1.10e+00 1nkxA 348 1.13e+00 1hij 129 2.00e+00 1rcb a.26.1.2 16857 1afi 72 2.05e+00 1aw0 d.58.17.1 39339 1l8bA 190 2.13e+00 d.86.1.1 73683 1ipc 217 2.25e+00 1hziA 129 2.54e+00 1rcb a.26.1.2 61449 1zakA 222 2.58e+00 1zin c.37.1.1 31913 g.41.2.1 45202 1rcb 129 2.59e+00 1rcb a.26.1.2 16854 1itl 130 2.61e+00 1rcb a.26.1.2 16859 1qghA 156 2.69e+00 1qghA a.25.1.1 16728 1blf 689 2.76e+00 1cb6A c.94.1.2 35859 c.94.1.2 35860 1zin 217 3.08e+00 1zin c.37.1.1 31915 g.41.2.1 45178 1ujuA 111 3.23e+00 1dfx 125 3.41e+00 1dfx b.1.13.1 22367 g.41.5.2 45255 1di1A 300 3.62e+00 1di1A a.128.1.4 19446 1p3jA 217 3.77e+00 1bbn 133 4.03e+00 1rcb a.26.1.2 16861 1j2pA 246 4.58e+00 d.153.1.4 84022 1dtzA 689 5.61e+00 1cb6A c.94.1.2 59134 c.94.1.2 59135 1e3yA 104 5.86e+00 1fadA a.77.1.2 18426 1j2qA 237 6.36e+00 d.153.1.4 84029 1s3gA 217 7.76e+00 1mzbA 136 7.80e+00 1osdA 72 8.01e+00 1qqp3 220 9.77e+00 1qqp3 1fhjA 141 9.89e+00 a.1.1.2 59837 1pujA 282 1.01e+01 c.37.1.8 88294 1lcsA 211 1.08e+01 b.20.1.1 84580 1p0yA 444 1.14e+01 a.166.1.1 87654 b.85.7.3 87655 1jw1A 689 1.20e+01 c.94.1.2 84234 c.94.1.2 84235 1mla 309 1.45e+01 1mla c.19.1.1 31031 d.58.23.1 39383 1a4fA 141 1.78e+01 1abwA a.1.1.2 15394 1bwoA 90 1.78e+01 1rzl a.52.1.1 17807 1s1iI 168 1.83e+01 1es7B 89 1.96e+01 1es7B g.7.1.3 44465 1rewC 135 1.97e+01 1rhoA 145 1.98e+01 1rhoA b.1.18.8 21899 1g6eA 87 2.06e+01 1g6eA b.11.1.6 60317 1npiA 61 2.09e+01 g.3.7.1 80685 1idjA 359 2.13e+01 1qcxA b.80.1.2 28026 1k23A 309 2.15e+01 c.107.1.1 68029 1bwzA 274 2.21e+01 1bwzA d.21.1.1 38337 d.21.1.1 38338 1gqzA 274 2.26e+01 d.21.1.1 83311 d.21.1.1 83312 1ybvA 283 2.29e+01 1ybvA c.2.1.2 29948 1g0oA 283 2.29e+01 1ybvA c.2.1.2 60181 1c40A 141 2.32e+01 1abwA a.1.1.2 15395 1bjjA 122 2.40e+01 1poa a.133.1.2 19530 1idk 359 2.62e+01 1qcxA b.80.1.2 28025 1put 106 2.80e+01 1ayfA d.15.4.1 37680 1jc1A 235 2.93e+01 1pdxA 106 2.93e+01 1ayfA d.15.4.1 37682 1kktA 511 2.96e+01 a.102.2.1 68687 1bcg 77 3.02e+01 1aho g.3.7.1 44130 1timA 247 3.08e+01 1amk c.1.1.1 28453 1i4yA 114 3.10e+01 2mhr a.24.4.1 61738 1r7sA 106 3.25e+01 1j1nA 492 3.26e+01 c.94.1.1 83978 1ksiA 642 3.30e+01 1ksiB b.30.2.1 24408 d.17.2.1 38043 d.17.2.1 38044 1tpwA 247 3.33e+01 1amk c.1.1.1 28449 1tpc1 247 3.34e+01 1amk 1tph1 247 3.36e+01 1amk 1tpb1 247 3.39e+01 1amk 1tpuA 247 3.52e+01 1amk c.1.1.1 28441 1rw3A 455 3.52e+01 1n7kA 234 3.53e+01 c.1.10.1 85374 1tpvA 247 3.55e+01 1amk c.1.1.1 28443 1iwhA 141 3.56e+01 a.1.1.2 76882 1n82A 331 3.86e+01 1fadA 99 3.93e+01 1fadA a.77.1.2 18428 1gpx 106 3.95e+01 1ayfA d.15.4.1 37681